(Q34837342)

4 August 2017

title

Exploring the bZIP transcription factor regulatory network in Neurospora crassa (English)

1 reference

Putative NADH:flavin oxidoreductase

4 August 2017

main subject

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Putative glutathione transferase

5 February 2019

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Putative glutathione peroxidase

6 February 2019

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6 February 2019

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6 February 2019

Putative protoporphyrinogen oxidase

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Putative zinc-containing alcohol dehydrogenase

6 February 2019

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putative theta class glutathione s-transferase

6 February 2019

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Putative NADH-dependent flavin oxidoreductase

6 February 2019

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putative alcohol dehydrogenase

6 February 2019

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Basic leucine zipper (bZIP) type transcription factor involved in regulation of secondary metabolism

6 February 2019

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Ortholog(s) have role in cellular response to heat, cellular response to hydrogen peroxide

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bZIP transcription factor

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Cross-pathway control protein A, putative

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Homologous to bZIP family transcription factor human AP-1 and Aspergillus nidulans AtfA

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Ortholog(s) have role in cellular response to heat, cellular response to hydrogen peroxide

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Ortholog(s) have 3'-tRNA processing endoribonuclease activity, role in mitochondrial tRNA 3'-end processing, nuclear tRNA 3'-trailer cleavage, endonucleolytic and mitochondrion, nucleus localization

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bZIP transcription factor

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zip-like-1

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kinetochore protein-18

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nitrogen catabolic enzyme regulatory protein

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NADPH dehydrogenase

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transcription factor-1

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transcription factor-1

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steroid-6

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zinc finger transcription factor-39

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zinc finger transcription factor-39

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glycosyl hydrolase unclassified family-3

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cutinase G-box binding protein

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transcription factor-21

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transcription factor-21

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oxidoreductase

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transcriptional regulatory protein pro-1

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NAD-epimerase/dehydratase-2

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extracellular serine carboxypeptidase, variant 1

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extracellular serine carboxypeptidase

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conidiation at high carbon dioxide-1 protein

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all development altered-1

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C2H2 finger domain-containing protein FlbC

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alpha/beta hydrolase fold protein

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conidiation-specific protein-8

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regulatory protein Cys-3

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zinc finger transcription factor-23

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calpain-5

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alkanesulfonate oxygenase-1

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fungal specific transcription factor

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ribosomal RNA-processing protein 12

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methionine-21

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rodlet protein

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C6 zinc finger regulator fluffy

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zinc-binding alcohol dehydrogenase

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cellulase

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zinc finger transcription factor 1

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uricase-1

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zinc finger transcription factor-24

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zinc finger transcription factor-24

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pH-response transcription factor pacC/RIM101

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zinc finger transcription factor-44

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TAH-1, variant 1

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TAH-1

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transcription factor steA

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Septal pore-associated protein, putative

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All development-altered regulator ADA-6

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thioredoxin-6

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norsolorinic acid reductase

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12-oxophytodienoate reductase 1

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aldose reductase

0 references

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DNA-binding protein cre-1

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LysM domain-containing protein

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short chain dehydrogenase/reductase SDR

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fungal specific transcription factor

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homeobox domain-containing protein

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zinc finger transcription factor-13

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cation chloride cotransporter

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ABC transporter-9

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submerged protoperithecia-1, variant 1

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submerged protoperithecia-1

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ascospore lethal-1, variant 1

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ascospore lethal-1

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peroxiredoxin HYR1

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tan spore protein

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theta class glutathione S-transferase

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APC amino acid permease, variant 1

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APC amino acid permease

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proteinase T

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BEAK-2

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HLH transcription factor

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cross-pathway control protein 1

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Ap1-like protein

0 references

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zinc-containing alcohol dehydrogenase

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MFS peptide transporter

0 references

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glutathione S-transferase-4

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sugar transporter-22

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Pyruvate decarboxylase

0 references

Integral membrane protein

0 references

short chain dehydrogenase, variant 1

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Short chain dehydrogenase

0 references

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peroxidase/catalase 2

0 references

glutathione transferase

0 references

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1 reference

Chaoguang Tian

1

1 reference

4 August 2017

Jingyi Li

series ordinal

2

1 reference

4 August 2017

N Louise Glass

series ordinal

3

1 reference

4 August 2017

publication date

16 November 2010

1 reference

4 August 2017

1 reference

4 August 2017

volume

157

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4 August 2017

issue

Pt 3

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4 August 2017

page(s)

747-759

1 reference

Identification of the Candida albicans Cap1p regulon.

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Dissecting colony development of Neurospora crassa using mRNA profiling and comparative genomics approaches

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Multiple pathways differentially regulate global oxidative stress responses in fission yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

The Aspergillus fumigatus transcriptional regulator AfYap1 represents the major regulator for defense against reactive oxygen intermediates but is dispensable for pathogenicity in an intranasal mouse infection model

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Transcriptional profiling of cross pathway control in Neurospora crassa and comparative analysis of the Gcn4 and CPC1 regulons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Enabling a community to dissect an organism: overview of the Neurospora functional genomics project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Oxidative stress in Schizosaccharomyces pombe: different H2O2 levels, different response pathways.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

VIB-1 is required for expression of genes necessary for programmed cell death in Neurospora crassa

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

A systems approach to mapping DNA damage response pathways

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Role of the Hog1 stress-activated protein kinase in the global transcriptional response to stress in the fungal pathogen Candida albicans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Transcription factor families have much higher expansion rates in plants than in animals.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Translational regulation of GCN4 and the general amino acid control of yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Transcriptional regulatory code of a eukaryotic genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

GFP as a tool to analyze the organization, dynamics and function of nuclei and microtubules in Neurospora crassa.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

RIP: the evolutionary cost of genome defense

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

The Fungal Genetics Stock Center: from molds to molecules.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

The genome sequence of the filamentous fungus Neurospora crassa

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Regulation of the yeast Yap1p nuclear export signal is mediated by redox signal-induced reversible disulfide bond formation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

The Saccharomyces cerevisiae Sko1p transcription factor mediates HOG pathway-dependent osmotic regulation of a set of genes encoding enzymes implicated in protection from oxidative damage

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Genomic expression programs in the response of yeast cells to environmental changes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

The fluffy gene of Neurospora crassa encodes a Gal4p-type C6 zinc cluster protein required for conidial development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Regulation of yAP-1 nuclear localization in response to oxidative stress

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Changes in gene expression elicited by amino acid limitation in Neurospora crassa strains having normal or mutant cross-pathway amino acid control

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

cys-3, the positive-acting sulfur regulatory gene of Neurospora crassa, encodes a sequence-specific DNA-binding protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

cpc-1, the general regulatory gene for genes of amino acid biosynthesis in Neurospora crassa, is differentially expressed during the asexual life cycle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Production of the CYS3 regulator, a bZIP DNA-binding protein, is sufficient to induce sulfur gene expression in Neurospora crassa

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

An AP-1-like transcription factor, NAP-1, regulates expression of the glutathione S-transferase and NADH:flavin oxidoreductase genes in Neurospora crassa

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Roles of putative His-to-Asp signaling modules HPT-1 and RRG-2, on viability and sensitivity to osmotic and oxidative stresses in Neurospora crassa.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Activation of the redox sensor Pap1 by hydrogen peroxide requires modulation of the intracellular oxidant concentration

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Analysis of the oxidative stress regulation of the Candida albicans transcription factor, Cap1p.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081083

Characteristics of a transport-deficient mutant (nap) of Neurospora crassa

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21081763

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Designing Experiments Using Spotted Microarrays to Detect Gene Regulation Differences Within and Among Species

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21081763

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cap1p is involved in multiple pathways of oxidative stress response in Candida albicans

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21081763

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1099/MIC.0.045468-0

1 reference

4 August 2017

1 reference

4 August 2017

1 reference