(Q35948280)

11 August 2017

Transcriptional profiling of cross pathway control in Neurospora crassa and comparative analysis of the Gcn4 and CPC1 regulons (English)

1 reference

methionyl-tRNA synthetase

11 August 2017

0 references

Short chain dehydrogenase

0 references

valyl-tRNA synthetase

0 references

alanyl-tRNA synthetase

0 references

carbamoyl-phosphate synthase large subunit

0 references

Prolyl-tRNA synthetase

0 references

MFS transporter

0 references

hypothetical protein

0 references

histidine biosynthesis trifunctional protein

0 references

vacuolar membrane PQ loop repeat protein

0 references

lysyl-tRNA synthetase

0 references

lysyl-tRNA synthetase, variant 1

0 references

isoleucyl-tRNA synthetase

0 references

Aspartyl-tRNA synthetase

0 references

2-methylcitrate dehydratase

0 references

Aspartate-semialdehyde dehydrogenase

0 references

isoleucyl-tRNA synthetase

0 references

nitrilase-6

0 references

Ornithine carbamoyltransferase

0 references

Tryptophan synthetase

0 references

leucyl-tRNA synthetase

0 references

asparaginyl-tRNA synthetase

0 references

methionine synthase

0 references

anthranilate synthase component II

0 references

anthranilate synthase component II, variant 1

0 references

catalase-3

0 references

glycyl-tRNA synthetase 1

0 references

glutamyl-tRNA synthetase

0 references

arginyl-tRNA synthetase

0 references

glutaminyl-tRNA synthetase

0 references

pyridoxine 1

0 references

carbamoyl-phosphate synthase small subunit, variant 1

0 references

carbamoyl-phosphate synthase small subunit

0 references

Prolyl-tRNA synthetase

0 references

Cystathionine beta-lyase

0 references

tyrosyl-tRNA synthetase

0 references

Homoaconitase

0 references

glutamyl-tRNA synthetase

0 references

cpc-3 protein

0 references

gamma-glutamyl phosphate reductase

0 references

tryptophanyl-tRNA synthetase

0 references

translation initiation factor eIF-2B subunit delta

0 references

seryl-tRNA synthetase

0 references

aspartokinase-1

0 references

isocitrate lyase

0 references

asparagine synthetase 2

0 references

imidazole glycerol phosphate synthase hisHF

0 references

Aspartyl-tRNA synthetase

0 references

adenylosuccinate synthetase

0 references

cysteinyl-tRNA synthetase

0 references

lysyl-tRNA synthetase

0 references

cross-pathway control protein 1

0 references

anthranilate synthase component I

0 references

phenylalanyl-tRNA synthetase subunit alpha

0 references

histidyl-tRNA synthetase

0 references

translation initiation factor eif-2b epsilon subunit

0 references

threonyl-tRNA synthetase, variant 1

0 references

threonyl-tRNA synthetase, variant 2

0 references

threonyl-tRNA synthetase

0 references

Serine hydroxymethyltransferase

0 references

Argininosuccinate lyase

0 references

peroxidase/catalase 2

0 references

1 reference

Matthew S Sachs

3

0 references

author name string

Chaoguang Tian

series ordinal

1

1 reference

11 August 2017

Takao Kasuga

series ordinal

2

1 reference

11 August 2017

N Louise Glass

series ordinal

4

1 reference

11 August 2017

20 April 2007

1 reference

11 August 2017

1 reference

11 August 2017

6

1 reference

11 August 2017

6

1 reference

11 August 2017

1018-1029

1 reference

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Activator Gcn4p and Cyc8p/Tup1p are interdependent for promoter occupancy at ARG1 in vivo

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Translational regulation of GCN4 and the general amino acid control of yeast

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Transcriptional profiling of Saccharomyces cerevisiae cells under adhesion-inducing conditions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Functional evolution of a cis-regulatory module

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Conservation and evolution of cis-regulatory systems in ascomycete fungi

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

An experimental evaluation of a loop versus a reference design for two-channel microarrays

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Transcriptional regulatory code of a eukaryotic genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Candida albicans biofilms: a developmental state associated with specific and stable gene expression patterns

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Defining transcription modules using large-scale gene expression data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

INCREASED ACTIVITY OF TRYPTOPHAN BIOSYNTHETIC ENZYMES IN HISTIDINE MUTANTS OF NEUROSPORA CRASSA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Phagocytosis by neutrophils induces an amino acid deprivation response in Saccharomyces cerevisiae and Candida albicans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

A gene-coexpression network for global discovery of conserved genetic modules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

The evolution of transcriptional regulation in eukaryotes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

A multiplicity of coactivators is required by Gcn4p at individual promoters in vivo

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Transcriptional regulatory networks in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Gcn4 co-ordinates morphogenetic and metabolic responses to amino acid starvation in Candida albicans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Design issues for cDNA microarray experiments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

TOR modulates GCN4-dependent expression of genes turned on by nitrogen limitation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Glucose limitation induces GCN4 translation by activation of Gcn2 protein kinase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Cluster analysis and display of genome-wide expression patterns

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

cpc-3, the Neurospora crassa homologue of yeast GCN2, encodes a polypeptide with juxtaposed eIF2alpha kinase and histidyl-tRNA synthetase-related domains required for general amino acid control

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Translation of the yeast transcriptional activator GCN4 is stimulated by purine limitation: implications for activation of the protein kinase GCN2.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

5' untranslated sequences are required for the translational control of a yeast regulatory gene

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Evidence for translational regulation of the activator of general amino acid control in yeast

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Positive regulation in the general amino acid control of Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Identification of AAS genes and their regulatory role in general control of amino acid biosynthesis in yeast

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Cross-pathway regulation: tryptophan-mediated control of histidine and arginine biosynthetic enzymes in Neurospora crassa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Cross-pathway regulation: histidine-mediated control of histidine, tryptophan, and arginine biosynthetic enzymes in Neurospora crassa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Multiple upstream AUG codons mediate translational control of GCN4.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

GCN4 protein, a positive transcription factor in yeast, binds general control promoters at all 5' TGACTC 3' sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Mechanisms of gene regulation in the general control of amino acid biosynthesis in Saccharomyces cerevisiae.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

The cross-pathway control gene of Neurospora crassa, cpc-1, encodes a protein similar to GCN4 of yeast and the DNA-binding domain of the oncogene v-jun-encoded protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Determination of the inactivating alterations in two mutant alleles of the Neurospora crassa cross-pathway control gene cpc-1

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Characterization of Neurospora CPC1, a bZIP DNA-binding protein that does not require aligned heptad leucines for dimerization

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

cpc-1, the general regulatory gene for genes of amino acid biosynthesis in Neurospora crassa, is differentially expressed during the asexual life cycle

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Characterization of the formate (for) locus, which encodes the cytosolic serine hydroxymethyltransferase of Neurospora crassa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Inhibition of aminoacyl-transfer ribonucleic acid synthetases and the regulation of amino acid biosynthetic enzymes in Neurospora crassa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Global role of the protein kinase Gcn2 in the human pathogen Candida albicans.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

The Aspergillus fumigatus transcriptional activator CpcA contributes significantly to the virulence of this fungal pathogen

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Structure of the trifunctional trp-1 gene from Neurospora crassa and its aberrant expression in Escherichia coli

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Cloning and characterization of the multifunctional his-3 gene of Neurospora crassa.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Changes in gene expression elicited by amino acid limitation in Neurospora crassa strains having normal or mutant cross-pathway amino acid control

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Developmental expression of genes involved in conidiation and amino acid biosynthesis in Neurospora crassa

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Functional and structural genomics using PEDANT.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951524

Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes

24 September 2018

1 reference

12 December 2020

Statistical design and the analysis of gene expression microarray data

1 reference

12 December 2020

Regulation of mitochondrial transcription during the stringent response in yeast

1 reference

12 December 2020

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

1 reference

12 December 2020

Regulation of amino acid synthetic enzymes in Neurospora crassa in the presence of high concentrations of amino acids

1 reference

12 December 2020

Cloning of the arg-12 gene of Neurospora crassa and regulation of its transcript via cross-pathway amino acid control

1 reference

12 December 2020

Amino acid acquisition, cross-pathway control, and virulence in Aspergillus

1 reference

12 December 2020

Mutants affecting amino acid cross-pathway control inNeurospora crassa

1 reference

12 December 2020

Identifiers

DOI

10.1128/EC.00078-07

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

17449655

1 reference