(Q34842155)

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Parallel tagged amplicon sequencing of transcriptome-based genetic markers for Triturus newts with the Ion Torrent next-generation sequencing platform

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Europe PubMed Central

PubMed publication ID

4 August 2017

Parallel tagged amplicon sequencing of transcriptome-based genetic markers for Triturus newts with the Ion Torrent next-generation sequencing platform (English)

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Europe PubMed Central

PubMed publication ID

4 August 2017

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amplicon sequencing

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based on heuristic

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B Wielstra

1

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Jan Willem Arntzen

7

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J W Arntzen

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Europe PubMed Central

PubMed publication ID

4 August 2017

author name string

E Duijm

2

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Europe PubMed Central

PubMed publication ID

4 August 2017

P Lagler

3

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Europe PubMed Central

PubMed publication ID

4 August 2017

Y Lammers

4

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Europe PubMed Central

PubMed publication ID

4 August 2017

W R M Meilink

5

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Europe PubMed Central

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4 August 2017

J M Ziermann

6

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Europe PubMed Central

PubMed publication ID

4 August 2017

publication date

19 March 2014

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Europe PubMed Central

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4 August 2017

Molecular Ecology Resources

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Europe PubMed Central

PubMed publication ID

4 August 2017

14

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Europe PubMed Central

PubMed publication ID

4 August 2017

5

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

1080-1089

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

A revised taxonomy of crested newts in the Triturus karelinii group (Amphibia: Caudata: Salamandridae), with the description of a new species

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8 July 2018

Development, validation and high-throughput analysis of sequence markers in nonmodel species.

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8 July 2018

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

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The Norway spruce genome sequence and conifer genome evolution

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8 July 2018

Tracing glacial refugia of Triturus newts based on mitochondrial DNA phylogeography and species distribution modeling

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8 July 2018

A multimarker phylogeography of crested newts (Triturus cristatus superspecies) reveals cryptic species

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8 July 2018

Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners

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SNP genotyping for detecting the 'rare allele phenomenon' in hybrid zones.

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8 July 2018

Postglacial species displacement in Triturus newts deduced from asymmetrically introgressed mitochondrial DNA and ecological niche models

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8 July 2018

Estimating ancestry and heterozygosity of hybrids using molecular markers

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8 July 2018

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

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8 July 2018

High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

Anchored hybrid enrichment for massively high-throughput phylogenomics

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8 July 2018

LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

Applications of next-generation sequencing to phylogeography and phylogenetics

1 reference

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8 July 2018

Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics.

1 reference

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8 July 2018

Next-generation hybridization and introgression

1 reference

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8 July 2018

An integrated semiconductor device enabling non-optical genome sequencing

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8 July 2018

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

Unraveling the rapid radiation of crested newts (Triturus cristatus superspecies) using complete mitogenomic sequences

1 reference

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8 July 2018

create: a software to create input files from diploid genotypic data for 52 genetic software programs

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

Application of single nucleotide polymorphisms to non-model species: a technical review.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

A combination of techniques proves useful in the development of nuclear markers in the newt genus Triturus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

A decade's perspective on DNA sequencing technology

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8 July 2018

Applications of next generation sequencing in molecular ecology of non-model organisms

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

The Sequence Alignment/Map format and SAMtools

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8 July 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

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8 July 2018

Asymmetric viability of reciprocal-cross hybrids between crested and marbled newts (Triturus cristatus and T. Marmoratus)

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285185

8 July 2018

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

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8 July 2018

Rapid SNP discovery and genetic mapping using sequenced RAD markers

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8 July 2018

BatchPrimer3: a high throughput web application for PCR and sequencing primer design

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8 July 2018

Intron size, abundance, and distribution within untranslated regions of genes

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Speciational history of Australian grass finches (Poephila) inferred from thirty gene trees

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8 July 2018

A model-based method for identifying species hybrids using multilocus genetic data.

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8 July 2018

Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences

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Selfish DNA: the ultimate parasite

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8 July 2018

SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing.

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21 January 2018

Divergence in the face of gene flow: the case of two newts (amphibia: salamandridae).

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21 January 2018

Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12242

21 January 2018

The need for jumpstarting amphibian genome projects

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21 January 2018

Surfing during population expansions promotes genetic revolutions and structuration

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Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

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12 December 2020

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10.1111/1755-0998.12242

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

PMC publication ID

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Europe PubMed Central

PubMed publication ID

4 August 2017

PubMed publication ID

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Europe PubMed Central

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4 August 2017

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