(Q34842642)

4 August 2017

title

Presence of a characteristic D-D-E motif in IS1 transposase (English)

1 reference

4 August 2017

Shinya Ohta

1

1 reference

ORCID Public Data File 2021

author name string

Ken Tsuchida

2

1 reference

4 August 2017

Sunju Choi

3

1 reference

4 August 2017

Yasuhiko Sekine

4

1 reference

4 August 2017

Yasuyuki Shiga

5

1 reference

4 August 2017

Eiichi Ohtsubo

6

1 reference

4 August 2017

language of work or name

English

0 references

publication date

1 November 2002

1 reference

4 August 2017

published in

Journal of Bacteriology

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4 August 2017

volume

184

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4 August 2017

issue

22

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4 August 2017

page(s)

6146-6154

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The genome of M. acetivorans reveals extensive metabolic and physiological diversity

4 August 2017

cites work

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8 July 2018

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8 July 2018

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Involvement of H-NS in transpositional recombination mediated by IS1

8 July 2018

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Three-dimensional structure of the Tn5 synaptic complex transposition intermediate

8 July 2018

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The PSIPRED protein structure prediction server

8 July 2018

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Organization and dynamics of the Mu transpososome: recombination by communication between two active sites

8 July 2018

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Protein secondary structure prediction based on position-specific scoring matrices

8 July 2018

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Inhibition of transpositional recombination by OrfA and OrfB proteins encoded by insertion sequence IS3.

8 July 2018

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Isolation and characterization of IS1 circles.

8 July 2018

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Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding Regions

8 July 2018

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Bacterial insertion sequences

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

A proposed superfamily of transposase genes: transposon-like elements in ciliated protozoa and a common "D35E" motif

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

The IS4 family of insertion sequences: evidence for a conserved transposase motif

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Identification of residues in the Mu transposase essential for catalysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Mutagenesis of the IS1 transposase: importance of a His-Arg-Tyr triad for activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integration

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

IS1-encoded proteins, InsA and the InsA-B'-InsB transframe protein (transposase): functions deduced from their DNA-binding ability.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Factors determining frequency of plasmid cointegration mediated by insertion sequence IS 1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Multiple copies of iso-insertion sequences of IS1 in Shigella dysenteriae chromosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Plasmids containing insertion elements are potential transposons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Improved tools for biological sequence comparison

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

High efficiency transformation of E. coli by high voltage electroporation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Distribution and abundance of insertion sequences among natural isolates of Escherichia coli.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Repressor gene finO in plasmids R100 and F: constitutive transfer of plasmid F is caused by insertion of IS3 into F finO.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

The integrase family of site-specific recombinases: regional similarities and global diversity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Transposable element IS1 intrinsically generates target duplications of variable length

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Mutational analysis of the open reading frames in the transposable element IS1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Expression of proteins essential for IS1 transposition: specific binding of InsA to the ends of IS1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Frameshifting is required for production of the transposase encoded by insertion sequence 1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Basic local alignment search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

A simple single-step procedure for small-scale preparation of Escherichia coli plasmids

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Functional organization of the ends of IS1: specific binding site for an IS 1-encoded protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Four types of IS1 with differences in nucleotide sequence reside in the Escherichia coli K-12 chromosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Translational control of transposition activity of the bacterial insertion sequence IS1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Evidence for a second conserved arginine residue in the integrase family of recombination proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Identification of the site of translational frameshifting required for production of the transposase encoded by insertion sequence IS 1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Residues critical for retroviral integrative recombination in a region that is highly conserved among retroviral/retrotransposon integrases and bacterial insertion sequence transposases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

DNA sequence of the transposable element IS1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

IS1 insertion generates duplication of a nine base pair sequence at its target site

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Nucleotide sequence of an insertion element, IS1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

The presence of diverse IS elements and an avrPphD homologue that acts as a virulence factor on the pathogenicity plasmid of Erwinia herbicola pv. gypsophilae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Translational control in production of transposase and in transposition of insertion sequence IS3.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=151954

Regulation of IS1 transposition by the insA gene product

26 October 2018

1 reference

12 December 2020

The regulatory role of the IS1-encoded InsA protein in transposition

1 reference

12 December 2020

Transposition of IS1 circles

1 reference

12 December 2020

Sequence analysis of Tn9 insertions in the lacZ gene

1 reference

12 December 2020

Insertion element IS1 encodes two structural genes required for its transposition

1 reference

12 December 2020

The three chemical steps of Tn10/IS10 transposition involve repeated utilization of a single active site

1 reference

12 December 2020

10.1128/JB.184.22.6146-6154.2002

Identifiers

DOI

1 reference

4 August 2017

1 reference

4 August 2017

1 reference