(Q34851749)

4 August 2017

Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force (English)

1 reference

4 August 2017

Gregory J Gemmen

1

1 reference

4 August 2017

Rachel Millin

series ordinal

2

1 reference

4 August 2017

Douglas E Smith

series ordinal

3

1 reference

4 August 2017

language of work or name

English

0 references

publication date

25 July 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

4 August 2017

1 reference

4 August 2017

103

1 reference

4 August 2017

31

1 reference

4 August 2017

11555-11560

1 reference

DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force

4 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Simultaneous binding of three recognition sites is necessary for a concerted plasmid DNA cleavage by EcoRII restriction endonuclease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

A general method for manipulating DNA sequences from any organism with optical tweezers.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Statistical-mechanical theory of DNA looping.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Molecular basis of the effects of shear stress on vascular endothelial cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

How restriction enzymes became the workhorses of molecular biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Type II restriction endonucleases: structure and mechanism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Disruption of protein-mediated DNA looping by tension in the substrate DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

REBASE--restriction enzymes and DNA methyltransferases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Near-field-magnetic-tweezer manipulation of single DNA molecules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

A mechanical basis for chromosome function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

One recognition sequence, seven restriction enzymes, five reaction mechanisms.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Enzyme-mediated DNA looping

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Diversity of type II restriction endonucleases that require two DNA recognition sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Single molecule detection of DNA looping by NgoMIV restriction endonuclease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

New insight into site-specific recombination from Flp recombinase-DNA structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Making contacts on a nucleic acid polymer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

DNA binding and recognition by the IIs restriction endonuclease MboII.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Structure and function of type II restriction endonucleases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Imaging DNA loops induced by restriction endonuclease EcoRII. A single amino acid substitution uncouples target recognition from cooperative DNA interaction and cleavage

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Reactions of type II restriction endonucleases with 8-base pair recognition sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Use of specific oligonucleotide duplexes to stimulate cleavage of refractory DNA sites by restriction endonucleases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Quality and position of the three lac operators of E. coli define efficiency of repression.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

DNA recognition by DNase I.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

EcoRII can be activated to cleave refractory DNA recognition sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

NaeI endonuclease binding to pBR322 DNA induces looping

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

DNA looping between the origin of replication of Epstein-Barr virus and its enhancer site: stabilization of an origin complex with Epstein-Barr nuclear antigen 1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1520314

DiANNA: a web server for disulfide connectivity prediction

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0604463103

Going the distance: a current view of enhancer action

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0604463103

Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0604463103

Decreased resistance to bacterial infection and granulocyte defects in IAP-deficient mice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0604463103

Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0604463103

Forced unraveling of nucleosomes assembled on heterogeneous DNA using core histones, NAP-1, and ACF.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0604463103

Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loops

21 January 2018

1 reference

12 December 2020

FokI requires two specific DNA sites for cleavage

1 reference

12 December 2020

Hopping, jumping and looping by restriction enzymes

1 reference

12 December 2020

Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator protein

1 reference

12 December 2020

1 reference

12 December 2020

Chromosome pairing via multiple interstitial interactions before and during meiosis in yeast

1 reference

12 December 2020

Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules

1 reference

12 December 2020

Oligonucleotide stimulators allow complete cleavage of agarose-embedded DNA by particular type II restriction endonucleases

1 reference

12 December 2020

The Cfr10I restriction enzyme is functional as a tetramer

1 reference

12 December 2020

Formation of loops in DNA under tension

1 reference

12 December 2020

Statistics of loop formation along double helix DNAs

1 reference

12 December 2020

Alternative geometries of DNA looping: an analysis using the SfiI endonuclease

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0604463103

1 reference

4 August 2017

0 references

1 reference

4 August 2017

1 reference