(Q34854889)

4 August 2017

WildSpan: mining structured motifs from protein sequences (English)

1 reference

4 August 2017

Chien-Yu Chen

2

0 references

author name string

Chen-Ming Hsu

series ordinal

1

1 reference

PubMed ID

21453542

4 August 2017

Baw-Jhiune Liu

series ordinal

3

1 reference

4 August 2017

31 March 2011

1 reference

Algorithms for Molecular Biology

4 August 2017

1 reference

4 August 2017

6

1 reference

4 August 2017

1

1 reference

4 August 2017

6

1 reference

https://scigraph.springernature.com/pub.10.1186/1748-7188-6-6

4 August 2017

0 references

cites work

E1DS: catalytic site prediction based on 1D signatures of concurrent conservation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Discovering sequence motifs with arbitrary insertions and deletions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Assessment of composite motif discovery methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Identification of hot regions in protein-protein interactions by sequential pattern mining

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

iPDA: integrated protein disorder analyzer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

8 July 2018

The PROSITE database.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Protein-Protein Docking Benchmark 2.0: an update

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

The Universal Protein Resource (UniProt)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Conserved residue clustering and protein structure prediction.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Greedy mixture learning for multiple motif discovery in biological sequences.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Efficient discovery of conserved patterns using a pattern graph.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Discovering active motifs in sets of related protein sequences and using them for classification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Detecting patterns in protein sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

A method to predict functional residues in proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

SPLASH: structural pattern localization analysis by sequential histograms.

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1748-7188-6-6

Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1748-7188-6-6

Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1748-7188-6-6

Identification of sequence motifs from a set of proteins with related function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1748-7188-6-6

Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082213

Mining protein sequences for motifs

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21453542

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Construction of a dictionary of sequence motifs that characterize groups of related proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21453542

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1748-7188-6-6

1 reference

4 August 2017

journals/almob/HsuCL11

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

4 August 2017

1 reference

PubMed ID

21453542