(Q34865022)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria (English)

1 reference

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21 January 2020

0 references

7

1 reference

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21 January 2020

author name string

Shuai Man

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

Rubin Cheng

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

Cuicui Miao

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

Qianhong Gong

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

Yuchao Gu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

Xinzhi Lu

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

Wengong Yu

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

language of work or name

English

0 references

publication date

3 February 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

volume

39

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

issue

8

1 reference

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21 January 2020

page(s)

e50

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 2.5 Generic

21 January 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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8 July 2018

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8 July 2018

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In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA

8 July 2018

1 reference

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Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism

8 July 2018

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8 July 2018

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The role of small RNAs in quorum sensing

8 July 2018

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Small noncoding RNAs controlling pathogenesis

8 July 2018

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No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus

8 July 2018

1 reference

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Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi.

8 July 2018

1 reference

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Paired termini stabilize antisense RNAs and enhance conditional gene silencing in Escherichia coli

8 July 2018

1 reference

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The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism.

8 July 2018

1 reference

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Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq

8 July 2018

1 reference

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Identification of small Hfq-binding RNAs in Listeria monocytogenes

8 July 2018

1 reference

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Functional analysis of luxS in Staphylococcus aureus reveals a role in metabolism but not quorum sensing

8 July 2018

1 reference

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Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Three-dimensional structures of fibrillar Sm proteins: Hfq and other Sm-like proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Effect of RyhB small RNA on global iron use in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The small RNA regulators of Escherichia coli: roles and mechanisms*

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

GadY, a small-RNA regulator of acid response genes in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

An efficiently regulated promoter system for Cryptococcus neoformans utilizing the CTR4 promoter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Controlling mRNA stability and translation with small, noncoding RNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The bacterial Sm-like protein Hfq: a key player in RNA transactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator

8 July 2018

1 reference

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Global analysis of small RNA and mRNA targets of Hfq

8 July 2018

1 reference

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Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs

8 July 2018

1 reference

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Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

8 July 2018

1 reference

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Mfold web server for nucleic acid folding and hybridization prediction

8 July 2018

1 reference

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Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

A novel sRNA component of the carbon storage regulatory system of Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Identification of Hedgehog pathway components by RNAi in Drosophila cultured cells.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Predicted structure and phyletic distribution of the RNA-binding protein Hfq.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Identification of critical staphylococcal genes using conditional phenotypes generated by antisense RNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Hfq is necessary for regulation by the untranslated RNA DsrA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

A two unit antisense RNA cassette test system for silencing of target genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The Cryptococcus neoformans GAL7 gene and its use as an inducible promoter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Kinetic aspects of control of plasmid replication by antisense RNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

MurA (MurZ), the enzyme that catalyzes the first committed step in peptidoglycan biosynthesis, is essential in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The function of micF RNA. micF RNA is a major factor in the thermal regulation of OmpF protein in Escherichia coli.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Antisense RNA: its functions and applications in gene regulation--a review

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Function of micF as an antisense RNA in osmoregulatory expression of the ompF gene in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The role of antisense RNA in gene regulation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

The gene for a tRNA modifying enzyme, m5U54-methyltransferase, is essential for viability in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082891

Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq.

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR034

The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR034

A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR034

A genome-based approach for the identification of essential bacterial genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR034

On the facultative requirement of the bacterial RNA chaperone, Hfq.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKR034

fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21296758

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Introduction of an RNA stability element at the 5'-end of an antisense RNA cassette increases the inhibition of target RNA translation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21296758

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR034

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21296758%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

21296758

1 reference