(Q34869203)

5 August 2017

title

Reconstructing each cell's genome within complex microbial communities-dream or reality? (English)

1 reference

5 August 2017

5

Tanja Woyke

0 references

Patrick Schwientek

3

object named as

Patrick Schwientek

0 references

author name string

Scott Clingenpeel

1

1 reference

5 August 2017

Alicia Clum

2

1 reference

5 August 2017

Christian Rinke

4

1 reference

5 August 2017

publication date

1 January 2014

1 reference

Frontiers in Microbiology

5 August 2017

published in

1 reference

5 August 2017

volume

5

1 reference

5 August 2017

page(s)

771

1 reference

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

A quantitative comparison of single-cell whole genome amplification methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Recent advances in genomic DNA sequencing of microbial species from single cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum 'Diapherotrites'

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Effects of sample treatments on genome recovery via single-cell genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Insights into the phylogeny and coding potential of microbial dark matter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

The future is now: single-cell genomics of bacteria and archaea

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Genome-wide detection of single-nucleotide and copy-number variations of a single human cell

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Single cell genomics: an individual look at microbes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Genomic sequencing of uncultured microorganisms from single cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Artificial polyploidy improves bacterial single cell genome recovery

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Single cell genome sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Single-cell genomics: unravelling the genomes of unculturable microorganisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Enigmatic, ultrasmall, uncultivated Archaea.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Shifting the genomic gold standard for the prokaryotic species definition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Whole genome amplification and de novo assembly of single bacterial cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

A procedure for highly specific, sensitive, and unbiased whole-genome amplification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Nanoliter reactors improve multiple displacement amplification of genomes from single cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Genomic insights that advance the species definition for prokaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Review and re-analysis of domain-specific 16S primers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Cultivating the uncultured

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287102

Molecular crowding increases the amplification success of multiple displacement amplification and short tandem repeat genotyping.

8 July 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00771

Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00771

Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00771

Transfer of Thermus ruber (Loginova et al. 1984), Thermus silvanus (Tenreiro et al. 1995), and Thermus chliarophilus (Tenreiro et al. 1995) to Meiothermus gen. nov. as Meiothermus ruber comb. nov., Meiothermus silvanus comb. nov., and Meiothermus ...

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00771

Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00771

21 January 2018

Identifiers

DOI

10.3389/FMICB.2014.00771

1 reference

5 August 2017

1 reference

5 August 2017

1 reference