(Q34924369)

English

RNA-Seq reveals dynamic changes of gene expression in key stages of intestine regeneration in the sea cucumber Apostichopus japonicus. [corrected].

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scholarly article

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Europe PubMed Central

PubMed publication ID

5 August 2017

RNA-Seq reveals dynamic changes of gene expression in key stages of intestine regeneration in the sea cucumber Apostichopus japonicus. [corrected]. (English)

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

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Apostichopus japonicus

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

author name string

Lina Sun

1

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Hongsheng Yang

2

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Muyan Chen

3

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Deyou Ma

4

1 reference

Europe PubMed Central

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5 August 2017

Chenggang Lin

5

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Europe PubMed Central

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5 August 2017

language of work or name

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publication date

6 August 2013

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Europe PubMed Central

PubMed publication ID

5 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

8

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

8

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

e69441

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

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Creative Commons Attribution 4.0 International

6 August 2013

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April 2022 Public Data File from Crossref

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0 references

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Transcriptome sequencing and characterization for the sea cucumber Apostichopus japonicus (Selenka, 1867)

1 reference

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Large scale gene expression profiling during intestine and body wall regeneration in the sea cucumber Apostichopus japonicus.

1 reference

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LPS-induced genes in intestinal tissue of the sea cucumber Holothuria glaberrima

1 reference

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Regeneration, repair and remembering identity: the three Rs of Hox gene expression

1 reference

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Syndecan-4-expressing muscle progenitor cells in the SP engraft as satellite cells during muscle regeneration.

1 reference

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Regeneration of the radial nerve cord in the sea cucumber Holothuria glaberrima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

RNA-Seq: a revolutionary tool for transcriptomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

The transcriptional landscape of the yeast genome defined by RNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Annexin A3 expression increases in hepatocytes and is regulated by hepatocyte growth factor in rat liver regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Regulation of liver regeneration and hepatocarcinogenesis by suppressor of cytokine signaling 3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Notch signaling regulates regeneration in the avian retina.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Common cellular events occur during wound healing and organ regeneration in the sea cucumber Holothuria glaberrima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Bone morphogenetic protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Distinct profiles of expressed sequence tags during intestinal regeneration in the sea cucumber Holothuria glaberrima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Distinct Wnt signaling pathways have opposing roles in appendage regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Bridging the regeneration gap: genetic insights from diverse animal models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Transdifferentiation in holothurian gut regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Normal newt limb regeneration requires matrix metalloproteinase function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

The Wnt signaling pathway in development and disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

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Post-transcriptional regulation of low density lipoprotein receptor protein by proprotein convertase subtilisin/kexin type 9a in mouse liver.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Essential and separable roles for Syndecan-3 and Syndecan-4 in skeletal muscle development and regeneration.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Ependymin, a gene involved in regeneration and neuroplasticity in vertebrates, is overexpressed during regeneration in the echinoderm Holothuria glaberrima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Expression of Notch-1 and its ligand Jagged-1 in rat liver during liver regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Activation of Notch signaling pathway precedes heart regeneration in zebrafish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Transcriptional profiling and regulation of the extracellular matrix during muscle regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Visceral regeneration in holothurians

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Matrix metalloproteinase gelatinase B (MMP-9) coordinates and effects epithelial regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Molecular cloning of a cDNA for rat TM4SF4, a homolog of human il-TMP (TM4SF4), and enhanced expression of the corresponding gene in regenerating rat liver(1)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Attractin/mahogany/zitter plays a critical role in myelination of the central nervous system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Serum amyloid A protein in an echinoderm: its primary structure and expression during intestinal regeneration in the sea cucumber Holothuria glaberrima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Regulation of intestinal regeneration: new insights

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Induction of lef1 during zebrafish fin regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Annexin 1 expression and phosphorylation are upregulated during liver regeneration and transformation in antithrombin III SV40 T large antigen transgenic mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Matrix metalloproteinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Notch signaling: cell fate control and signal integration in development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Speedy: a novel cell cycle regulator of the G2/M transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Functions of gelsolin: motility, signaling, apoptosis, cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Mechanisms of Wnt signaling in development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Expression of matrix metalloproteinases 2 and 9 in regenerating skeletal muscle: a study in experimentally injured and mdx muscles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Attractin (DPPT-L), a member of the CUB family of cell adhesion and guidance proteins, is secreted by activated human T lymphocytes and modulates immune cell interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

BDNF and NT-4/5 prevent atrophy of rat rubrospinal neurons after cervical axotomy, stimulate GAP-43 and Talpha1-tubulin mRNA expression, and promote axonal regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

The significance of digital gene expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Extracellular matrix remodeling at the early stages of liver regeneration in the rat.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Molecular cloning of up-regulated cytoskeletal genes from regenerating skeletal muscle: potential role of myocyte enhancer factor 2 proteins in the activation of muscle-regeneration-associated genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Planarian Hox genes: novel patterns of expression during regeneration.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

SPARC, a secreted protein associated with morphogenesis and tissue remodeling, induces expression of metalloproteinases in fibroblasts through a novel extracellular matrix-dependent pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Regulation of development and differentiation by the extracellular matrix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Regulation of HoxA expression in developing and regenerating axolotl limbs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Neurofilament and tubulin expression recapitulates the developmental program during axonal regeneration: induction of a specific beta-tubulin isotype

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Rapid induction of the major embryonic alpha-tubulin mRNA, T alpha 1, during nerve regeneration in adult rats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Expression of myosin isoforms during notexin-induced regeneration of rat soleus muscles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Corticospinal neurons exhibit a novel pattern of cytoskeletal gene expression after injury

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

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An extracellular matrix molecule of newt and axolotl regenerating limb blastemas and embryonic limb buds: immunological relationship of MT1 antigen with tenascin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Changes in cytoskeletal protein synthesis following axon injury and during axon regeneration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

8 July 2018

Gene expression profiling of intestinal regeneration in the sea cucumber.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Extracellular matrix remodeling and metalloproteinase involvement during intestine regeneration in the sea cucumber Holothuria glaberrima

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Myogenesis during holothurian intestinal regeneration

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Requirement of Notch activation during regeneration of the intestinal epithelia

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Evidence for Notch signaling involvement in retinal regeneration of adult newt

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Comparison of gene expression in hepatocellular carcinoma, liver development, and liver regeneration.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Wnt6 marks sites of epithelial transformations in the chick embryo

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Role of Wnt-6 in limb myogenesis.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Embryonic origin and Hox status determine progenitor cell fate during adult bone regeneration.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Activation of Hox genes during caudal regeneration of the polychaete annelid Platynereis dumerilii.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Regeneration-specific expression pattern of three posterior Hox genes.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Expression of Hoxb13 and Hoxc10 in developing and regenerating Axolotl limbs and tails.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

BMP inhibition-driven regulation of six-3 underlies induction of newt lens regeneration

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Digit regeneration is regulated by Msx1 and BMP4 in fetal mice

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

The association of human mesenchymal stem cells with BMP-7 improves bone regeneration of critical-size segmental bone defects in athymic rats.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Syndecan-3 and syndecan-4 specifically mark skeletal muscle satellite cells and are implicated in satellite cell maintenance and muscle regeneration.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Matrix metalloproteinase expression and function during fin regeneration in zebrafish: analysis of MT1-MMP, MMP2 and TIMP2.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0069441

21 January 2018

Evolution of regeneration and fission in annelids: insights from engrailed- and orthodenticle-class gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735544

26 October 2018

Cellular mechanisms of intestine regeneration in the sea cucumber, Holothuria glaberrima Selenka (Holothuroidea:Echinodermata)

1 reference

https://pubmed.ncbi.nlm.nih.gov/23936330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ectodermal Wnt-6 promotes Myf5-dependent avian limb myogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23936330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Temporal requirement for bone morphogenetic proteins in regeneration of the tail and limb of Xenopus tadpoles

1 reference

https://pubmed.ncbi.nlm.nih.gov/23936330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression profiles of the genes associated with metabolism and transport of amino acids and their derivatives in rat liver regeneration

1 reference

https://pubmed.ncbi.nlm.nih.gov/23936330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Urinary levels of regenerating islet-derived protein III β and gelsolin differentiate gentamicin from cisplatin-induced acute kidney injury in rats

1 reference

https://pubmed.ncbi.nlm.nih.gov/23936330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Activation of factor IX zymogen results in exposure of a binding site for low-density lipoprotein receptor-related protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/23936330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression profiling in stably regenerating skeletal muscle of dystrophin-deficient mdx mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/23936330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Organization of actin cytoskeleton during early endothelial regeneration in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/23936330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Acyl-CoA-independent esterification of retinol bound to cellular retinol-binding protein (type II) by microsomes from rat small intestine

1 reference

https://pubmed.ncbi.nlm.nih.gov/23936330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0069441

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

2013PLoSO...869441S

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

ResearchGate publication ID

0 references

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