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A scaling normalization method for differential expression analysis of RNA-seq data
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title
A scaling normalization method for differential expression analysis of RNA-seq data
(English)
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main subject
RNA analysis
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based on heuristic
inferred from title
RNA sequencing
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based on heuristic
inferred from title
RNA-Seq
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based on heuristic
inferred from title
author
Alicia Oshlack
series ordinal
2
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Mark D. Robinson
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Mark D Robinson
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1
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language of work or name
English
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publication date
2010
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published in
Genome Biology
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volume
11
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page(s)
R25
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issue
3
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describes a project that uses
edgeR
object named as
edgeR
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CZ Software Mentions: A large dataset of software mentions in the biomedical literature
exact match
https://scigraph.springernature.com/pub.10.1186/gb-2010-11-3-r25
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cites work
Transcript length bias in RNA-seq data confounds systems biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
RNA-Seq: a revolutionary tool for transcriptomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
Bioconductor: open software development for computational biology and bioinformatics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
Mapping and quantifying mammalian transcriptomes by RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
Alternative isoform regulation in human tissue transcriptomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
Stem cell transcriptome profiling via massive-scale mRNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
7 April 2017
Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
27 September 2017
Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
27 September 2017
In-depth characterization of the microRNA transcriptome in a leukemia progression model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
27 September 2017
Moderated statistical tests for assessing differences in tag abundance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
27 September 2017
Evidence based selection of housekeeping genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
27 September 2017
Small-sample estimation of negative binomial dispersion, with applications to SAGE data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
27 September 2017
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
27 September 2017
Human housekeeping genes are compact
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
27 September 2017
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
30 May 2018
Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2864565
retrieved
30 May 2018
Identifiers
DOI
10.1186/GB-2010-11-3-R25
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
126816
Dimensions Publication ID
1050509557
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OpenCitations bibliographic resource ID
126816
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
126816
PMCID
2864565
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
126816
PubMed ID
20196867
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
126816
ResearchGate publication ID
41668690
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