(Q41597733)

English

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

scientific article published on 15 October 2008

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms (English)

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Gert-Jan van Ommen

8

object named as

Gert-Jan B van Ommen

0 references

Helene Thygesen

3

object named as

Helene H Thygesen

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

author name string

Peter A C 't Hoen

1

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Yavuz Ariyurek

2

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Erno Vreugdenhil

4

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Rolf H A M Vossen

5

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Renée X de Menezes

6

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Judith M Boer

7

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Johan T den Dunnen

9

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Europe PubMed Central

PMC publication ID

4 October 2017

language of work or name

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publication date

15 October 2008

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Europe PubMed Central

PMC publication ID

4 October 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

4 October 2017

36

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Europe PubMed Central

PMC publication ID

4 October 2017

21

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

e141

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

1 reference

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6 June 2018

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

1 reference

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6 June 2018

Stem cell transcriptome profiling via massive-scale mRNA sequencing

1 reference

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6 June 2018

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

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6 June 2018

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

1 reference

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6 June 2018

The transcriptional landscape of the yeast genome defined by RNA sequencing

1 reference

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6 June 2018

Can subtle changes in gene expression be consistently detected with different microarray platforms?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Gene expression profiling by massively parallel sequencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.

1 reference

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6 June 2018

Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy

1 reference

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6 June 2018

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Whole-genome re-sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

DeepSAGE--digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data

1 reference

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6 June 2018

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Sequence biases in large scale gene expression profiling data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcriptionand organismic complexity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Modeling Sage data with a truncated gamma-Poisson model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Genetic interactions between doublecortin and doublecortin-like kinase in neuronal migration and axon outgrowth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Antisense transcription in the mammalian transcriptome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Accurate multiplex polony sequencing of an evolved bacterial genome

1 reference

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6 June 2018

Genome sequencing in microfabricated high-density picolitre reactors

1 reference

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6 June 2018

Tag-based approaches for transcriptome research and genome annotation

1 reference

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6 June 2018

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

A comparison of gene expression profiles produced by SAGE, long SAGE, and oligonucleotide chips

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

A global test for groups of genes: testing association with a clinical outcome

1 reference

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6 June 2018

Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Widespread occurrence of antisense transcription in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Catalytic and regulatory domains of doublecortin kinase-1

1 reference

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6 June 2018

Statistical evaluation of SAGE libraries: consequences for experimental design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

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Evaluation of Affymetrix Gene Chip sensitivity in rat hippocampal tissue using SAGE analysis. Serial Analysis of Gene Expression

1 reference

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Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis.

1 reference

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6 June 2018

DCAMKL1 encodes a protein kinase with homology to doublecortin that regulates microtubule polymerization

1 reference

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6 June 2018

Patterns of variant polyadenylation signal usage in human genes

1 reference

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6 June 2018

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

1 reference

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6 June 2018

Expression profiling of antisense transcripts on DNA arrays.

1 reference

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19 August 2018

Evaluation of DNA microarray results with quantitative gene expression platforms

1 reference

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19 August 2018

A large quantity of novel human antisense transcripts detected by LongSAGE.

1 reference

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19 August 2018

Functional differences between two DCLK splice variants.

1 reference

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19 August 2018

GeneChip analysis of hippocampal gene expression profiles of short- and long-attack-latency mice: technical and biological implications

1 reference

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19 August 2018

Large-scale gene expression profiling of discrete brain regions: potential, limitations, and application in genetics of aggressive behavior.

1 reference

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[The context organization of functional regions in yeast genes with high-level expression]

1 reference

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19 August 2018

Analysis of human transcriptomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

19 August 2018

Multiple-laboratory comparison of microarray platforms

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN705

21 January 2018

Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18927111

12 December 2020

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inferred from PubMed ID database lookup

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10.1093/NAR/GKN705

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Europe PubMed Central

PMC publication ID

4 October 2017

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1 reference

https://api.fatcat.wiki/v0/release/b4zf5k2ifbcftbwzahj63b3tp4

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Europe PubMed Central

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4 October 2017

PubMed publication ID

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Europe PubMed Central

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4 October 2017

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