(Q33323244)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

title

Can subtle changes in gene expression be consistently detected with different microarray platforms? (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

7

Mattias de Hollander

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

author name string

Paola Pedotti

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Erno Vreugdenhil

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Geert J Schenk

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Rolf Ham Vossen

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Yavuz Ariyurek

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Rowan Kuiper

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Gertjan J B van Ommen

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Johan T den Dunnen

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Judith M Boer

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

Renée X de Menezes

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

language of work or name

English

0 references

publication date

10 March 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

issue

1

1 reference

13 September 2019

page(s)

124

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

4 January 2020

limma

object named as

limma

R package limma

2 references

22 June 2022

https://europepmc.org/article/PMC/2335120

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

affy

object named as

Affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-124

0 references

cites work

A potential role for calcium / calmodulin-dependent protein kinase-related peptide in neuronal apoptosis: in vivo and in vitro evidence.

1 reference

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The microtubule-associated protein doublecortin-like regulates the transport of the glucocorticoid receptor in neuronal progenitor cells

21 June 2018

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Analyzing gene expression data in terms of gene sets: methodological issues

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis

21 June 2018

1 reference

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GABA sets the tempo for activity-dependent adult neurogenesis

21 June 2018

1 reference

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Rat toxicogenomic study reveals analytical consistency across microarray platforms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Using RNA sample titrations to assess microarray platform performance and normalization techniques

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer

21 June 2018

1 reference

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Doublecortin-like kinase functions with doublecortin to mediate fiber tract decussation and neuronal migration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Genetic interactions between doublecortin and doublecortin-like kinase in neuronal migration and axon outgrowth

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Three microarray platforms: an analysis of their concordance in profiling gene expression.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Independence and reproducibility across microarray platforms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

21 June 2018

1 reference

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Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays.

21 June 2018

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

21 June 2018

1 reference

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A global test for groups of genes: testing association with a clinical outcome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Evaluation of gene expression measurements from commercial microarray platforms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Catalytic and regulatory domains of doublecortin kinase-1

21 June 2018

1 reference

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A stem cell molecular signature

21 June 2018

1 reference

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"Stemness": transcriptional profiling of embryonic and adult stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Excitatory actions of gaba during development: the nature of the nurture

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Design issues for cDNA microarray experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Analysis of matched mRNA measurements from two different microarray technologies

21 June 2018

1 reference

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GABA itself promotes the developmental switch of neuronal GABAergic responses from excitation to inhibition.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

KEGG: Kyoto Encyclopedia of Genes and Genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Doublecortin-like, a microtubule-associated protein expressed in radial glia, is crucial for neuronal precursor division and radial process stability.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Evaluation of DNA microarray results with quantitative gene expression platforms

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Group testing for pathway analysis improves comparability of different microarray datasets.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

The doublecortin and doublecortin-like kinase 1 genes cooperate in murine hippocampal development

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Doublecortin-like kinase controls neurogenesis by regulating mitotic spindles and M phase progression.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

GABAergic excitation promotes neuronal differentiation in adult hippocampal progenitor cells

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Dysregulation of gene expression in the 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-lesioned mouse substantia nigra.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Current issues for DNA microarrays: platform comparison, double linear amplification, and universal RNA reference.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Microarray reality checks in the context of a complex disease

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Enhancing scatterplots with smoothed densities.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Functional differences between two DCLK splice variants.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

A comparison of oligonucleotide and cDNA-based microarray systems.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Multiple-laboratory comparison of microarray platforms

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335120

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project

31 October 2018

1 reference

12 December 2020

Statistical methods and microarray data

1 reference

12 December 2020

Getting the noise out of gene arrays

1 reference

12 December 2020

Prediction of cancer outcome with microarrays: a multiple random validation strategy

1 reference

12 December 2020

1 reference

12 December 2020

Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature"

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-9-124

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 January 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-124

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18331641%20AND%20SRC:MED&resulttype=core&format=json

4 January 2020

1 reference