(Q34940979)

5 August 2017

title

kClust: fast and sensitive clustering of large protein sequence databases (English)

1 reference

5 August 2017

3

1 reference

5 August 2017

Maria Hauser

1

1 reference

5 August 2017

Christian E Mayer

series ordinal

2

1 reference

5 August 2017

publication date

15 August 2013

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5 August 2017

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5 August 2017

volume

14

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5 August 2017

page(s)

248

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CD-HIT: accelerated for clustering the next-generation sequencing data

5 August 2017

cites work

1 reference

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8 July 2018

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8 July 2018

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eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

8 July 2018

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SEED: efficient clustering of next-generation sequences

8 July 2018

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Ultra-fast sequence clustering from similarity networks with SiLiX.

8 July 2018

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DODO: an efficient orthologous genes assignment tool based on domain architectures. Domain based ortholog detection

8 July 2018

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Sequencing delivers diminishing returns for homology detection: implications for mapping the protein universe.

8 July 2018

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Search and clustering orders of magnitude faster than BLAST

8 July 2018

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A catalog of reference genomes from the human microbiome

8 July 2018

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A human gut microbial gene catalogue established by metagenomic sequencing

8 July 2018

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The Pfam protein families database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

UniRef: comprehensive and non-redundant UniProt reference clusters

8 July 2018

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Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments

8 July 2018

1 reference

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The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

8 July 2018

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

8 July 2018

1 reference

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UniProt: the Universal Protein knowledgebase

8 July 2018

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The COG database: an updated version includes eukaryotes

8 July 2018

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

8 July 2018

1 reference

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PatternHunter: faster and more sensitive homology search

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

An efficient algorithm for large-scale detection of protein families

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

Annotation transfer for genomics: measuring functional divergence in multi-domain proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

The SYSTERS protein sequence cluster set.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

SCOP: a structural classification of proteins database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

Effective protein sequence comparison

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

Improved tools for biological sequence comparison

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

Basic local alignment search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

Selection of representative protein data sets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

RSDB: representative protein sequence databases have high information content.

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-248

Automatic clustering of orthologs and inparalogs shared by multiple proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-248

Tolerating some redundancy significantly speeds up clustering of large protein databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-248

ProtoMap: automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3843501

Sequence clustering strategies improve remote homology recognitions while reducing search times

26 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-248

21 January 2018

Identifiers

DOI

10.1186/1471-2105-14-248

1 reference

journals/bmcbi/HauserMS13

5 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

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5 August 2017

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