(Q34945927)

5 August 2017

title

Evolution of synonymous codon usage in Neurospora tetrasperma and Neurospora discreta (English)

1 reference

5 August 2017

main subject

Neurospora tetrasperma

object named as

Neurospora tetrasperma

1 reference

Neurospora discreta

1 reference

C A Whittle

1

1 reference

5 August 2017

Y Sun

series ordinal

2

1 reference

5 August 2017

H Johannesson

series ordinal

3

1 reference

5 August 2017

publication date

14 March 2011

1 reference

Genome Biology and Evolution

5 August 2017

published in

1 reference

5 August 2017

volume

3

1 reference

5 August 2017

page(s)

332-343

1 reference

Neurospora in temperate forests of western North America

5 August 2017

cites work

1 reference

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8 July 2018

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8 July 2018

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8 July 2018

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Molecular evolution of synonymous codon usage in Populus

8 July 2018

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8 July 2018

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8 July 2018

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Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing.

8 July 2018

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The mating-type chromosome in the filamentous ascomycete Neurospora tetrasperma represents a model for early evolution of sex chromosomes

8 July 2018

1 reference

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Codon usage in twelve species of Drosophila

8 July 2018

1 reference

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8 July 2018

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Background selection in single genes may explain patterns of codon bias

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Synonymous codon usage in Escherichia coli: selection for translational accuracy.

8 July 2018

1 reference

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Multilocus sequence data reveal extensive phylogenetic species diversity within the Neurospora discreta complex

8 July 2018

1 reference

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Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

8 July 2018

1 reference

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A general tendency for conservation of protein length across eukaryotic kingdoms

8 July 2018

1 reference

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Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism

8 July 2018

1 reference

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Translational selection and yeast proteome evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

BLAT—The BLAST-Like Alignment Tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Breeding systems and genome evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Gene expression and molecular evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Cell and nuclear recognition mechanisms mediated by mating type in filamentous ascomycetes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

DNA sequence evolution: the sounds of silence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Unbiased estimation of the rates of synonymous and nonsynonymous substitution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Diverse programs of ascus development in pseudohomothallic species of Neurospora, Gelasinospora, and Podospora

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

A dispersed family of repetitive DNA sequences exhibits characteristics of a transposable element in the genus Lycopersicon.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Codon usage and tRNA content in unicellular and multicellular organisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Directional mutation pressure and neutral molecular evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Mutation rates differ among regions of the mammalian genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Directional mutation pressure and transfer RNA in choice of the third nucleotide of synonymous two-codon sets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

The 'effective number of codons' used in a gene

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Novel anticodon composition of transfer RNAs in Micrococcus luteus, a bacterium with a high genomic G + C content. Correlation with codon usage

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila.

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR018

The evolution of biased codon and amino acid usage in nematode genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR018

Mating system and recombination affect molecular evolution in four Triticeae species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR018

Synonymous codon bias is not caused by mutation bias in G+C-rich genes in humans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR018

Neutral evolution of synonymous base composition in the Brassicaceae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVR018

A comprehensive phylogeny of Neurospora reveals a link between reproductive mode and molecular evolution in fungi

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Patterns of codon usage bias in Silene latifolia.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Timeline: Neurospora: a model of model microbes.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Transposable elements in inbreeding and outbreeding populations

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089379

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21402862

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21402862

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Rates and patterns of molecular evolution in inbred and outbred Arabidopsis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21402862

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVR018

1 reference

5 August 2017

1 reference

5 August 2017

1 reference