Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q34980287)
Watch
English
L_RNA_scaffolder: scaffolding genomes with transcripts.
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
title
L_RNA_scaffolder: scaffolding genomes with transcripts
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
author
Youyi Kuang
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
author name string
Wei Xue
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
Jiong-Tang Li
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
Ya-Ping Zhu
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
Guang-Yuan Hou
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
Xiang-Fei Kong
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
Xiao-Wen Sun
series ordinal
7
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
language of work or name
English
0 references
publication date
8 September 2013
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
published in
BMC Genomics
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
volume
14
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
page(s)
604
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
cites work
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
The zebrafish reference genome sequence and its relationship to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Improving PacBio long read accuracy by short read alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Paired-end sequencing of long-range DNA fragments for de novo assembly of large, complex Mammalian genomes by direct intra-molecule ligation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
The oyster genome reveals stress adaptation and complexity of shell formation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Paired-end sequencing of Fosmid libraries by Illumina
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Draft genome of the pearl oyster Pinctada fucata: a platform for understanding bivalve biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Generation of long insert pairs using a Cre-LoxP Inverse PCR approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
GAGE: A critical evaluation of genome assemblies and assembly algorithms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
The UCSC Genome Browser database: extensions and updates 2011.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Fast scaffolding with small independent mixed integer programs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
The reality of pervasive transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Full-length transcriptome assembly from RNA-Seq data without a reference genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Genomewide characterization of non-polyadenylated RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Scaffolding pre-assembled contigs using SSPACE
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Ensembl 2011
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
De novo assembly of human genomes with massively parallel short read sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
ABySS: a parallel assembler for short read sequence data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Transcriptome sequencing to detect gene fusions in cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Assessing the gene space in draft genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
The complexity of the mammalian transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
BLAT—The BLAST-Like Alignment Tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Assembly of the working draft of the human genome with GigAssembler
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Ab initio gene finding in Drosophila genomic DNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3846640
retrieved
8 July 2018
Updating benchtop sequencing performance comparison
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1186%2F1471-2164-14-604
retrieved
21 January 2018
Identifiers
DOI
10.1186/1471-2164-14-604
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
PMCID
3846640
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
PubMed ID
24010822
1 reference
stated in
Europe PubMed Central
PMCID
3846640
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24010822%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 February 2020
ResearchGate publication ID
256466758
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
