(Q39348055)

11 September 2017

Fast scaffolding with small independent mixed integer programs (English)

1 reference

11 September 2017

Leena Salmela

1

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Esko Ukkonen

object named as

Esko Ukkonen

5

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Veli Mäkinen

object named as

Veli Mäkinen

2

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author name string

Niko Välimäki

3

1 reference

11 September 2017

Johannes Ylinen

4

1 reference

11 September 2017

language of work or name

English

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publication date

13 October 2011

1 reference

11 September 2017

1 reference

11 September 2017

27

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11 September 2017

23

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11 September 2017

3259-3265

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Creative Commons Attribution-NonCommercial 3.0 Unported

11 September 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

Scaffolding pre-assembled contigs using SSPACE

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

SOPRA: Scaffolding algorithm for paired reads via statistical optimization

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

De novo assembly of human genomes with massively parallel short read sequencing

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

The Sequence Alignment/Map format and SAMtools

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

SOAP2: an improved ultrafast tool for short read alignment

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

Genome assembly reborn: recent computational challenges

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

ABySS: a parallel assembler for short read sequence data

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

ALLPATHS: de novo assembly of whole-genome shotgun microreads

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

Efficient q-gram filters for finding all epsilon-matches over a given length

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

Hierarchical scaffolding with Bambus

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223363

10.1093/BIOINFORMATICS/BTR562

11 September 2017

Identifiers

DOI

1 reference

journals/bioinformatics/SalmelaMVYU11

11 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

11 September 2017

PubMed publication ID

21998153

1 reference