(Q34982192)

English

The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35

scientific article published on April 16, 2003

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35 (English)

1 reference

10.1073/PNAS.0835307100

https://api.crossref.org/works/10.1073/PNAS.0835307100

25 December 2023

prion protein family

0 references

Saccharomyces cerevisiae proteins

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12700355

25 December 2023

author name string

Jörg Gsponer

1

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Urs Haberthür

2

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Amedeo Caflisch

3

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

language of work or name

0 references

publication date

16 April 2003

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

full work available at URL

https://europepmc.org/articles/pmc154314?pdf=render

Portable Document Format

online access status

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12700355

25 December 2023

https://europepmc.org/articles/PMC154314

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12700355

25 December 2023

https://europepmc.org/articles/PMC154314?pdf=render

Portable Document Format

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12700355

25 December 2023

https://doi.org/10.1073/pnas.0835307100

online access status

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12700355

25 December 2023

https://pnas.org/doi/pdf/10.1073/pnas.0835307100

1 reference

10.1073/PNAS.0835307100

https://api.crossref.org/works/10.1073/PNAS.0835307100

25 December 2023

Proceedings of the National Academy of Sciences of the United States of America

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

100

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

5154-5159

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

De novo designed peptide-based amyloid fibrils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Stabilities and conformations of Alzheimer's beta -amyloid peptide oligomers (Abeta 16-22, Abeta 16-35, and Abeta 10-35): Sequence effects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Molecular dynamics simulations of alanine rich beta-sheet oligomers: Insight into amyloid formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Molecular dynamics simulations of protein folding from the transition state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

A possible role for pi-stacking in the self-assembly of amyloid fibrils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Evaluation of a fast implicit solvent model for molecular dynamics simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Role of native topology investigated by multiple unfolding simulations of four SH3 domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

An amyloid-forming peptide from the yeast prion Sup35 reveals a dehydrated beta-sheet structure for amyloid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Folding simulations of a three-stranded antiparallel beta -sheet peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Fast kinetics and mechanisms in protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Protein misfolding, evolution and disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Effective energy function for proteins in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

De novo design of a monomeric three-stranded antiparallel beta-sheet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Glutamine repeats and neurodegenerative diseases: molecular aspects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Folding and aggregation of designed proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Structural analysis of Alzheimer's beta(1-40) amyloid: protofilament assembly of tubular fibrils.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154314

8 July 2018

Thermodynamics of model prions and its implications for the problem of prion protein folding

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0835307100

21 January 2018

Protein refolding versus aggregation: computer simulations on an intermediate-resolution protein model

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0835307100

21 January 2018

Solvent environment conducive to protein aggregation

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0835307100

21 January 2018

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0835307100

21 January 2018

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0835307100

21 January 2018

Stacking and T-shape competition in aromatic-aromatic amino acid interactions

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0835307100

21 January 2018

Analysis of the minimal amyloid-forming fragment of the islet amyloid polypeptide. An experimental support for the key role of the phenylalanine residue in amyloid formation

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0835307100

21 January 2018

Analysis of protein aggregation kinetics.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0835307100

21 January 2018

Synchrotron X-ray studies suggest that the core of the transthyretin amyloid fibril is a continuous β-sheet helix

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0835307100

21 January 2018

Native topology or specific interactions: what is more important for protein folding?

1 reference

https://pubmed.ncbi.nlm.nih.gov/12700355

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Weak temperature dependence of the free energy surface and folding pathways of structured peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/12700355

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arrest of beta-amyloid fibril formation by a pentapeptide ligand

1 reference

https://pubmed.ncbi.nlm.nih.gov/12700355

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Finite representation of an infinite bulk system: Solvent boundary potential for computer simulations

25

1 reference

10.1073/PNAS.0835307100

https://api.crossref.org/works/10.1073/PNAS.0835307100

25 December 2023

Identifiers

10.1073/PNAS.0835307100

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

2003PNAS..100.5154G

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

ResearchGate publication ID

0 references

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