(Q34985077)

5 August 2017

title

Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy (English)

1 reference

5 August 2017

7

Uwe Ohler

1 reference

5 August 2017

Ting Ni

1

1 reference

5 August 2017

Yanqin Yang

2

1 reference

5 August 2017

Dina Hafez

3

1 reference

5 August 2017

Wenjing Yang

4

1 reference

5 August 2017

Kurtis Kiesewetter

5

1 reference

5 August 2017

Yoshi Wakabayashi

6

1 reference

5 August 2017

Weiqun Peng

8

1 reference

5 August 2017

Jun Zhu

9

1 reference

5 August 2017

language of work or name

English

0 references

publication date

11 September 2013

1 reference

5 August 2017

1 reference

5 August 2017

volume

14

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5 August 2017

page(s)

615

1 reference

Widespread and extensive lengthening of 3' UTRs in the mammalian brain

5 August 2017

cites work

1 reference

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Analysis of alternative cleavage and polyadenylation by 3' region extraction and deep sequencing.

8 July 2018

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Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation

8 July 2018

1 reference

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U1 snRNP determines mRNA length and regulates isoform expression

8 July 2018

1 reference

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An in-depth map of polyadenylation sites in cancer

8 July 2018

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Global patterns of tissue-specific alternative polyadenylation in Drosophila

8 July 2018

1 reference

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The poly(A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites.

8 July 2018

1 reference

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A quantitative atlas of polyadenylation in five mammals

8 July 2018

1 reference

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Transcriptional activity regulates alternative cleavage and polyadenylation

8 July 2018

1 reference

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RNA polymerase II kinetics in polo polyadenylation signal selection.

8 July 2018

1 reference

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Differential genome-wide profiling of tandem 3' UTRs among human breast cancer and normal cells by high-throughput sequencing.

8 July 2018

1 reference

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Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs

8 July 2018

1 reference

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U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

8 July 2018

1 reference

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The landscape of C. elegans 3'UTRs

8 July 2018

1 reference

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A paired-end sequencing strategy to map the complex landscape of transcription initiation

8 July 2018

1 reference

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Widespread transcription at neuronal activity-regulated enhancers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Biased chromatin signatures around polyadenylation sites and exons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Alternative polyadenylation: a mechanism maximizing transcriptome diversity in higher eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

The Sequence Alignment/Map format and SAMtools

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Fast and accurate short read alignment with Burrows-Wheeler transform

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Coherent but overlapping expression of microRNAs and their targets during vertebrate development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Molecular architecture of the human pre-mRNA 3' processing complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Alternative isoform regulation in human tissue transcriptomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

F-Seq: a feature density estimator for high-throughput sequence tags

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Tissue-specific splicing factor gene expression signatures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Sex determination involves synergistic action of SRY and SF1 on a specific Sox9 enhancer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

3' end mRNA processing: molecular mechanisms and implications for health and disease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Spatial preferences of microRNA targets in 3' untranslated regions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

RNA maps reveal new RNA classes and a possible function for pervasive transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Pre-messenger RNA processing and its regulation: a genomic perspective

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Connections between mRNA 3' end processing and transcription termination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Promoter features related to tissue specificity as measured by Shannon entropy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

A large-scale analysis of mRNA polyadenylation of human and mouse genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Mice lacking alpha-synuclein display functional deficits in the nigrostriatal dopamine system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

A tale of two termini: a functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

Pre-messenger RNA cleavage factor I (CFIm): potential role in alternative polyadenylation during spermatogenesis.

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-615

PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-615

Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-615

Transcription: Enhancers make non-coding RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-615

The role of 3'-untranslated region (3'-UTR) mediated mRNA stability in cardiovascular pathophysiology

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848854

26 October 2018

Identifiers

DOI

10.1186/1471-2164-14-615

1 reference

5 August 2017

1 reference

5 August 2017

1 reference