(Q34992825)

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Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation

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scholarly article

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Europe PubMed Central

PubMed publication ID

5 August 2017

Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation (English)

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Europe PubMed Central

PubMed publication ID

5 August 2017

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Physcomitrella patens

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Physcomitrella patens

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inferred from title

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25209349%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

3

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1 June 2020

4

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1 June 2020

7

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Peter Beyer

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1 June 2020

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Ralf Reski

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Europe PubMed Central

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1 June 2020

author name string

Anna K Beike

1

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1 June 2020

Danika Trautmann

5

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1 June 2020

Gertrud Wiedemann

6

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1 June 2020

Eva L Decker

8

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1 June 2020

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publication date

10 September 2014

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Europe PubMed Central

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5 August 2017

New Phytologist

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1 June 2020

205

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1 June 2020

2

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1 June 2020

869-881

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25209349%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

High contents of very long-chain polyunsaturated fatty acids in different moss species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

The moss Physcomitrella patens: methods and tools from cultivation to targeted analysis of gene function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Regeneration of Little Ice Age bryophytes emerging from a polar glacier with implications of totipotency in extreme environments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

DNA-binding domains of plant-specific transcription factors: structure, function, and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Redundancy and rewiring of genetic networks following genome-wide duplication events

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Metabolite profiling of the moss Physcomitrella patens reveals evolutionary conservation of osmoprotective substances

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

The evolutionary origin of orphan genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Integration of polyamines in the cold acclimation response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

The CBFs: three arabidopsis transcription factors to cold acclimate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Carotenoids and their cleavage products: biosynthesis and functions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

A hitchhiker's guide to the MADS world of plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Plant responses to cold: Transcriptome analysis of wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

The molecular and physiological responses of Physcomitrella patens to ultraviolet-B radiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Transcriptional control of gene expression by microRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Singlet oxygen in plants: production, detoxification and signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Cold stress regulation of gene expression in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Microarray analysis of transcriptional responses to abscisic acid and osmotic, salt, and drought stress in the moss, Physcomitrella patens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

A mitochondrial protein homologous to the mammalian peripheral-type benzodiazepine receptor is essential for stress adaptation in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Specific and unspecific responses of plants to cold and drought stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Moss systems biology en route: phytohormones in Physcomitrella development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Integration of abscisic acid signalling into plant responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Mosses as model systems for the study of metabolism and development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

A global survey of gene regulation during cold acclimation in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Why is golden rice golden (yellow) instead of red?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Physcomitrella patens is highly tolerant against drought, salt and osmotic stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

PLANT COLD ACCLIMATION: Freezing Tolerance Genes and Regulatory Mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

An improved and highly standardised transformation procedure allows efficient production of single and multiple targeted gene-knockouts in a moss, Physcomitrella patens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Early light-induced proteins protect Arabidopsis from photooxidative stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Non-photochemical quenching. A response to excess light energy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Carotenoids 3: in vivo function of carotenoids in higher plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301180

8 July 2018

Plant resistance to cold stress: mechanisms and environmental signals triggering frost hardening and dehardening.

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

The Arabidopsis cold-responsive transcriptome and its regulation by ICE1.

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

First plants cooled the Ordovician

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Characterization and functional analysis of ABSCISIC ACID INSENSITIVE3-like genes from Physcomitrella patens

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Abscisic acid-induced freezing tolerance in the moss Physcomitrella patens is accompanied by increased expression of stress-related genes.

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Cold acclimation in bryophytes: low-temperature-induced freezing tolerance in Physcomitrella patens is associated with increases in expression levels of stress-related genes but not with increase in level of endogenous abscisic acid

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Rapid degradation of starch in chloroplasts and concomitant accumulation of soluble sugars associated with ABA-induced freezing tolerance in the moss Physcomitrella patens

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Desiccation tolerance in bryophytes: a reflection of the primitive strategy for plant survival in dehydrating habitats?

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Induction of budding on chloronemata and caulonemata of the moss, Physcomitrella patens, using isopentenyladenine

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Relationship between frost tolerance and sugar concentration of various bryophytes in summer and winter.

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Differentially expressed genes under cold acclimation in Physcomitrella patens

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Prediction and validation of promoters involved in the abscisic acid response in Physcomitrella patens

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Target deletion of the AAA ATPase PpCDC48II in Physcomitrella patens results in freezing sensitivity after cold acclimation

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Dating the early evolution of plants: detection and molecular clock analyses of orthologs.

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

MIKC* MADS-box proteins: conserved regulators of the gametophytic generation of land plants

1 reference

https://api.crossref.org/works/10.1111%2FNPH.13004

21 January 2018

Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway

1 reference

https://pubmed.ncbi.nlm.nih.gov/25209349

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cold acclimation in the moss Physcomitrella patens involves abscisic acid-dependent signaling

1 reference

https://pubmed.ncbi.nlm.nih.gov/25209349

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1111/NPH.13004

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25209349%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25209349%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25209349%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

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