(Q34993611)

English

Transcriptome analysis during berry development provides insights into co-regulated and altered gene expression between a seeded wine grape variety and its seedless somatic variant

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scholarly article

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Europe PubMed Central

PubMed publication ID

5 August 2017

Transcriptome analysis during berry development provides insights into co-regulated and altered gene expression between a seeded wine grape variety and its seedless somatic variant (English)

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Europe PubMed Central

PubMed publication ID

5 August 2017

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4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Maria Stella Grando

5

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Chinedu Charles Nwafor

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Ivana Gribaudo

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Anna Schneider

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Laura Costantini

6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

language of work or name

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publication date

27 November 2014

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

15

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1030

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

describes a project that uses

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Temporal and spatial control of gene expression in horticultural crops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Genome-wide analysis and expression profile of the bZIP transcription factor gene family in grapevine (Vitis vinifera).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Mapping in an apple (Malus x domestica) F1 segregating population based on physical clustering of differentially expressed genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Vegetative and sperm cell-specific aquaporins of Arabidopsis highlight the vacuolar equipment of pollen and contribute to plant reproduction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

New stable QTLs for berry weight do not colocalize with QTLs for seed traits in cultivated grapevine (Vitis vinifera L.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

ABI3 controls embryo degreening through Mendel's I locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Wall associated kinases from plants - an overview

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Rice MtN3/saliva/SWEET family genes and their homologs in cellular organisms

1 reference

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8 July 2018

De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Transcriptome analysis at four developmental stages of grape berry (Vitis vinifera cv. Shiraz) provides insights into regulated and coordinated gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Molecular regulation of seed and fruit set.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Receptor-like kinases as surface regulators for RAC/ROP-mediated pollen tube growth and interaction with the pistil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The MADS box genes SEEDSTICK and ARABIDOPSIS Bsister play a maternal role in fertilization and seed development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The function of the RNA-binding protein TEL1 in moss reveals ancient regulatory mechanisms of shoot development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Male Sterile2 encodes a plastid-localized fatty acyl carrier protein reductase required for pollen exine development in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Cytokinin regulates the activity of reproductive meristems, flower organ size, ovule formation, and thus seed yield in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Differential expression analysis for sequence count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

agriGO: a GO analysis toolkit for the agricultural community

1 reference

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8 July 2018

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Fast and accurate long-read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The ubiquitin extension protein S27a is differentially expressed in developing flower organs of Thompson seedless versus Thompson seeded grape isogenic clones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

RNA-Seq: a revolutionary tool for transcriptomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

LECs go crazy in embryo development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The importance of being essential: EMBRYO-DEFECTIVE genes in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Berry and phenology-related traits in grapevine (Vitis vinifera L.): from quantitative trait loci to underlying genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Embryonic patterning in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The indeterminate gametophyte1 gene of maize encodes a LOB domain protein required for embryo Sac and leaf development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Molecular characterization of the major maize embryo globulin encoded by the glb1 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The Arabidopsis-mei2-like genes play a role in meiosis and vegetative growth in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

QTL analysis for fruit yield components in table grapes (Vitis vinifera).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Regulation of ovule development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

MADS-box protein complexes control carpel and ovule development in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The Arabidopsis LATERAL ORGAN BOUNDARIES-Domain Gene ASYMMETRIC LEAVES2 Functions in the Repression of KNOX Gene Expression and in Adaxial-Abaxial Patterning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Expression pattern of the Arabidopsis thaliana AtEP3/AtchitIV endochitinase gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Less is better: new approaches for seedless fruit production.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The SPOROCYTELESS gene of Arabidopsis is required for initiation of sporogenesis and encodes a novel nuclear protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Endosperm development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

The AP2/EREBP family of plant transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

AINTEGUMENTA, an APETALA2-like gene of Arabidopsis with pleiotropic roles in ovule development and floral organ growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Two different Em-like genes are expressed in Arabidopsis thaliana seeds during maturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Molecular and genetic characterization of two pollen-expressed genes that have sequence similarity to pectate lyases of the plant pathogen Erwinia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4301461

8 July 2018

Cellular programming of plant gene imprinting.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

The chloroplast ribosomal protein L21 gene is essential for plastid development and embryogenesis in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Analysis of gene expression patterns during seed coat development in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Genetic mapping of grapevine ( Vitis vinifera L.) applied to the detection of QTLs for seedlessness and berry weight.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

A genetic analysis of seed and berry weight in grapevine

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Validation assay of p3_VvAGL11 marker in a wide range of genetic background for early selection of stenospermocarpy in Vitis vinifera L.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

The metacaspase gene family of Vitis vinifera L.: characterization and differential expression during ovule abortion in stenospermocarpic seedless grapes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Arabidopsis MALE STERILITY1 encodes a PHD-type transcription factor and regulates pollen and tapetum development

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

MALE STERILITY1 is required for tapetal development and pollen wall biosynthesis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

The SPOROCYTELESS/NOZZLE gene is involved in controlling stamen identity in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Transparent testa16 plays multiple roles in plant development and is involved in lipid synthesis and embryo development in canola.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

The FERONIA receptor-like kinase mediates male-female interactions during pollen tube reception.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

A conifer ABI3-interacting protein plays important roles during key transitions of the plant life cycle

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Comparison of the expression patterns of two small gene families of S gene family receptor kinase genes during the defence response in Brassica oleracea and Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Arabidopsis FIMBRIN5, an actin bundling factor, is required for pollen germination and pollen tube growth.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

FIMBRIN1 is involved in lily pollen tube growth by stabilizing the actin fringe

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

VvBOR1, the grapevine ortholog of AtBOR1, encodes an efflux boron transporter that is differentially expressed throughout reproductive development of Vitis vinifera L.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Arabidopsis MYB26/MALE STERILE35 regulates secondary thickening in the endothecium and is essential for anther dehiscence.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

A chromatin immunoprecipitation (ChIP) approach to isolate genes regulated by AGL15, a MADS domain protein that preferentially accumulates in embryos.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Functional analysis of Avr9/Cf-9 rapidly elicited genes identifies a protein kinase, ACIK1, that is essential for full Cf-9-dependent disease resistance in tomato

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Do ethylene response factorS9 and -14 repress PR gene expression in the interaction between Piriformospora indica and Arabidopsis?

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-1030

21 January 2018

Tetrad pollen formation in quartet mutants of Arabidopsis thaliana is associated with persistence of pectic polysaccharides of the pollen mother cell wall

1 reference

https://pubmed.ncbi.nlm.nih.gov/25431125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis AtOPT3 protein functions in metal homeostasis and movement of iron to developing seeds

1 reference

https://pubmed.ncbi.nlm.nih.gov/25431125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel role for oleosins in freezing tolerance of oilseeds in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/25431125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The TRANSPARENT TESTA16 locus encodes the ARABIDOPSIS BSISTER MADS domain protein and is required for proper development and pigmentation of the seed coat

1 reference

https://pubmed.ncbi.nlm.nih.gov/25431125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Silencing of chaperonin 21, that was differentially expressed in inflorescence of seedless and seeded grapes, promoted seed abortion in tobacco and tomato fruits

1 reference

https://pubmed.ncbi.nlm.nih.gov/25431125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glycerol-3-phosphate acyltransferase 6 (GPAT6) is important for tapetum development in Arabidopsis and plays multiple roles in plant fertility

1 reference

https://pubmed.ncbi.nlm.nih.gov/25431125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-15-1030

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25431125%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

ResearchGate publication ID

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