(Q34994579)

5 August 2017

title

Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination (English)

1 reference

5 August 2017

8

Niko Beerenwinkel

0 references

Francesca Di Giallonardo

1

Francesca Di Giallonardo

0 references

Osvaldo Zagordi

Osvaldo Zagordi

2

0 references

Karin J Metzner

Karin J Metzner

10

0 references

Huldrych F Günthard

Huldrych F Günthard

9

0 references

author name string

Yannick Duport

3

1 reference

5 August 2017

Christine Leemann

4

1 reference

5 August 2017

Beda Joos

5

1 reference

5 August 2017

Marzanna Künzli-Gontarczyk

6

1 reference

5 August 2017

Rémy Bruggmann

7

1 reference

5 August 2017

language of work or name

English

0 references

publication date

18 September 2013

1 reference

5 August 2017

1 reference

5 August 2017

volume

8

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5 August 2017

issue

9

1 reference

5 August 2017

page(s)

e74249

1 reference

Creative Commons Attribution 4.0 International

5 August 2017

copyright license

start time

18 September 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA.

8 July 2018

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8 July 2018

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8 July 2018

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Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID

8 July 2018

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Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection

8 July 2018

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8 July 2018

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Systematic exploration of error sources in pyrosequencing flowgram data

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Low-frequency HIV-1 drug resistance mutations and risk of NNRTI-based antiretroviral treatment failure: a systematic review and pooled analysis

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Accurately measuring recombination between closely related HIV-1 genomes

8 July 2018

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The remarkable frequency of human immunodeficiency virus type 1 genetic recombination

8 July 2018

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Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo

8 July 2018

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Minority HIV-1 drug resistance mutations are present in antiretroviral treatment-naïve populations and associate with reduced treatment efficacy

8 July 2018

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8 July 2018

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8 July 2018

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Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance

8 July 2018

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Genome sequencing in microfabricated high-density picolitre reactors

8 July 2018

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

8 July 2018

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Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'

8 July 2018

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Evolutionary and immunological implications of contemporary HIV-1 variation.

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3776835

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8 July 2018

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8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3776835

Efficient suppression of minority drug-resistant HIV type 1 (HIV-1) variants present at primary HIV-1 infection by ritonavir-boosted protease inhibitor-containing antiretroviral therapy

8 July 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074249

Minority quasispecies of drug-resistant HIV-1 that lead to early therapy failure in treatment-naive and -adherent patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074249

Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074249

Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074249

Reducing chimera formation during PCR amplification to ensure accurate genotyping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074249

Recco: recombination analysis using cost optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0074249

Reducing the impact of PCR-mediated recombination in molecular evolution and environmental studies using a new-generation high-fidelity DNA polymerase

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3776835

PCR-mediated recombination of the amplification products of the Hibiscus tiliaceus cytosolic glyceraldehyde-3-phosphate dehydrogenase gene.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3776835

Minimizing DNA recombination during long RT-PCR

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24058534

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The impact of PCR-generated recombination on diversity estimation of mixed viral populations by deep sequencing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24058534

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

PCR-mediated recombination in amplification products derived from polyploid cotton

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24058534

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0074249

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference