(Q34996492)

5 August 2017

title

Different patterns of gene structure divergence following gene duplication in Arabidopsis (English)

1 reference

5 August 2017

1 reference

3

Andrew H Paterson

1 reference

5 August 2017

Yupeng Wang

1

1 reference

5 August 2017

Xu Tan

series ordinal

2

1 reference

5 August 2017

language of work or name

English

0 references

publication date

24 September 2013

1 reference

5 August 2017

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5 August 2017

volume

14

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5 August 2017

page(s)

652

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Locally duplicated ohnologs evolve faster than nonlocally duplicated ohnologs in Arabidopsis and rice

5 August 2017

cites work

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8 July 2018

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Divergence of duplicate genes in exon-intron structure

8 July 2018

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Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms

8 July 2018

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Evidence of function for conserved noncoding sequences in Arabidopsis thaliana

8 July 2018

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Evidence for network evolution in an Arabidopsis interactome map.

8 July 2018

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A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes

8 July 2018

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The combined effects of amino acid substitutions and indels on the evolution of structure within protein families

8 July 2018

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Impact of Indels on the Flanking Regions in Structural Domains

8 July 2018

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Insights from the comparison of plant genome sequences

8 July 2018

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Divergence of exonic splicing elements after gene duplication and the impact on gene structures.

8 July 2018

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Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

8 July 2018

1 reference

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Expression pattern divergence of duplicated genes in rice

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

8 July 2018

1 reference

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Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli

8 July 2018

1 reference

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Pervasive and persistent redundancy among duplicated genes in yeast

8 July 2018

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Preferential protection of protein interaction network hubs in yeast: evolved functionality of genetic redundancy

8 July 2018

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The gene balance hypothesis: from classical genetics to modern genomics

8 July 2018

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Functional analysis of gene duplications in Saccharomyces cerevisiae

8 July 2018

1 reference

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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

8 July 2018

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Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

The evolutionary fate of MULE-mediated duplications of host gene fragments in rice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Modeling gene and genome duplications in eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Role of duplicate genes in genetic robustness against null mutations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

The evolutionary fate and consequences of duplicate genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

The probability of duplicate gene preservation by subfunctionalization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Basic local alignment search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-652

Divergence in Expression between Duplicated Genes in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-652

All duplicates are not equal: the difference between small-scale and genome duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-652

Functional divergence of proteins through frameshift mutations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-652

Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-652

MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-652

Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression inOryza sativa(rice)

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-652

Not Born Equal: Increased Rate Asymmetry in Relocated and Retrotransposed Rodent Gene Duplicates

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3848917

Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24063813

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-652

1 reference

5 August 2017

1 reference

5 August 2017

1 reference