(Q35013462)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

title

Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

main subject

transmembrane protein

0 references

author

Jhih-Siang Lai

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Cheng-Wei Cheng

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

author name string

Allan Lo

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Ting-Yi Sung

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Wen-Lian Hsu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

publication date

11 October 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

page(s)

304

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24112406%20AND%20SRC:MED&resulttype=core&format=json

Computational comparative study of tuberculosis proteomes using a model learned from signal peptide structures

27 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Crystal structure of a potassium ion transporter, TrkH

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

TMPad: an integrated structural database for helix-packing folds in transmembrane proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Membrane protein folding: how important are hydrogen bonds?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Structure of a Eukaryotic CLC Transporter Defines an Intermediate State in the Transport Cycle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

MPRAP: an accessibility predictor for a-helical transmembrane proteins that performs well inside and outside the membrane

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Mechanism of substrate recognition and transport by an amino acid antiporter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Structure and mechanism of an amino acid antiporter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Predicting helix-helix interactions from residue contacts in membrane proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

How translocons select transmembrane helices

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

MemBrain: improving the accuracy of predicting transmembrane helices

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Structure of acid-sensing ion channel 1 at 1.9 A resolution and low pH

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Prediction of the burial status of transmembrane residues of helical membrane proteins.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Aromatic and cation-pi interactions enhance helix-helix association in a membrane environment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

On the derivation of propensity scales for predicting exposed transmembrane residues of helical membrane proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Membrane-protein topology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Crystallographic studies of the binding of ligands to the dicarboxylate site of Complex II, and the identity of the ligand in the "oxaloacetate-inhibited" state

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Prediction of transmembrane helix orientation in polytopic membrane proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Predicting the solvent accessibility of transmembrane residues from protein sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Lipid-protein interactions in double-layered two-dimensional AQP0 crystals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

MAFFT version 5: improvement in accuracy of multiple sequence alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Transmembrane proteins in the Protein Data Bank: identification and classification.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Validation of protein structures for protein data bank

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Side-chain contributions to membrane protein structure and stability

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Quantifying the accessible surface area of protein residues in their local environment.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Specificity in transmembrane helix-helix interactions can define a hierarchy of stability for sequence variants

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Substitution rates in alpha-helical transmembrane proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

The structural basis of protein targeting and translocation in bacteria.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Amino acid distributions in integral membrane protein structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Helical membrane protein folding, stability, and evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

8 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Membrane protein folding and stability: physical principles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

The role of the ribosome-translocon complex in translation and assembly of polytopic membrane proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Deviations from standard atomic volumes as a quality measure for protein crystal structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Modeling alpha-helical transmembrane domains: the calculation and use of substitution tables for lipid-facing residues

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

The helical hydrophobic moment: a measure of the amphiphilicity of a helix

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Prediction of protein function from sequence properties. Discriminant analysis of a data base

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Analysis of membrane and surface protein sequences with the hydrophobic moment plot

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

The interpretation of protein structures: Estimation of static accessibility

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Interior and surface of monomeric proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Hydrophobic organization of membrane proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-304

RHYTHM--a server to predict the orientation of transmembrane helices in channels and membrane-coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-304

Environment specific substitution tables improve membrane protein alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-304

TOPCONS: consensus prediction of membrane protein topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-304

Co-evolving residues in membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-304

Predicting functionally important residues from sequence conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-304

Molecular code for transmembrane-helix recognition by the Sec61 translocon

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-304

Lipophobicity and the residue environments of the transmembrane alpha-helical bundle

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Analysis and prediction of helix-helix interactions in membrane channels and transporters.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Empirical lipid propensities of amino acid residues in multispan alpha helical membrane proteins

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Are membrane proteins "inside-out" proteins?

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854514

Structural Determinants of Transmembrane Helical Proteins

25 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-304

Turns in transmembrane helices: determination of the minimal length of a “helical hairpin” and derivation of a fine-grained turn propensity scale 1 1Edited by F. E. Cohen

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-304

Do more complex organisms have a greater proportion of membrane proteins in their genomes?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24112406

12 December 2020

inferred from PubMed ID database lookup

Prediction of rotational orientation of transmembrane helical segments of integral membrane proteins using new environment-based propensities for amino acids derived from structural analyses

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24112406

12 December 2020

inferred from PubMed ID database lookup

Membrane protein folding and oligomerization: the two-stage model

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24112406

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2105-14-304

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/d3kalselgnhb3f2qua3zdu6fv4

30 July 2022

DBLP publication ID

journals/bmcbi/LaiCLSH13

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1023648527

0 references

Fatcat ID

release_d3kalselgnhb3f2qua3zdu6fv4

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/d3kalselgnhb3f2qua3zdu6fv4

30 July 2022

https://api.fatcat.wiki/v0/release/d3kalselgnhb3f2qua3zdu6fv4

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/d3kalselgnhb3f2qua3zdu6fv4

PubMed publication ID

1 reference

30 July 2022