(Q50686129)

17 March 2018

title

Predicting functionally important residues from sequence conservation. (English)

1 reference

17 March 2018

author name string

John A Capra

series ordinal

1

1 reference

17 March 2018

Mona Singh

series ordinal

2

1 reference

17 March 2018

language of work or name

English

0 references

publication date

22 May 2007

1 reference

17 March 2018

number of pages

8

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

17 March 2018

volume

23

1 reference

17 March 2018

page(s)

1875-1882

1 reference

17 March 2018

issue

15

1 reference

17 March 2018

The ENZYME database in 2000

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Analysis of catalytic residues in enzyme active sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Statistical analysis and prediction of protein-protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Exploiting sequence and structure homologs to identify protein-protein binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

The HSSP database of protein structure-sequence alignments and family profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Prediction of functionally important residues based solely on the computed energetics of protein structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Conservation and relative importance of residues across protein-protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Using a neural network and spatial clustering to predict the location of active sites in enzymes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Analysis and prediction of functional sub-types from protein sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Searching for functional sites in protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Evolutionary conservation of RecA genes in relation to protein structure and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

The interpretation of protein structures: Estimation of static accessibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Protein binding site prediction using an empirical scoring function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

An evolutionary trace method defines binding surfaces common to protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Divergence measures based on the Shannon entropy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Sequence variation in ligand binding sites in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Structure, function, and evolution of transient and obligate protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

THEMATICS: a simple computational predictor of enzyme function from structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Prediction of functional sites by analysis of sequence and structure conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Database of homology-derived protein structures and the structural meaning of sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Conserved residue clustering and protein structure prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Information-theoretical entropy as a measure of sequence variability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Scoring residue conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Conservation helps to identify biologically relevant crystal contacts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Incorporating background frequency improves entropy-based residue conservation measures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Information theory analysis of the relationship between primary sequence structure and ligand recognition among a class of facilitated transporters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM270

10.1093/BIOINFORMATICS/BTM270

21 January 2018

Identifiers

DOI

1 reference

17 March 2018

journals/bioinformatics/CapraS07

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

17 March 2018