(Q33247483)

24 July 2017

title

Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties (English)

1 reference

24 July 2017

main subject

support vector machine

1 reference

Cathy H Wu

2

1 reference

ORCID Public Data File 2021

author name string

Natalia V Petrova

series ordinal

1

1 reference

24 July 2017

publication date

21 June 2006

1 reference

24 July 2017

1 reference

24 July 2017

volume

7

1 reference

24 July 2017

page(s)

312

1 reference

Creative Commons Attribution 2.0 Generic

24 July 2017

copyright license

start time

21 June 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

support vector machine

1 reference

based on heuristic

inferred from title

cites work

Evolutionary trace residues in noroviruses: importance in receptor binding, antigenicity, virion assembly, and strain diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Searching for functional sites in protein structures.

21 June 2018

1 reference

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Prediction of functional sites by analysis of sequence and structure conservation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Automatic prediction of protein function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

SCOP database in 2004: refinements integrate structure and sequence family data

21 June 2018

1 reference

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Identification of protein biochemical functions by similarity search using the molecular surface database eF-site

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Ligand binding: functional site location, similarity and docking

21 June 2018

1 reference

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CASTp: Computed Atlas of Surface Topography of proteins

21 June 2018

1 reference

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Improved amino acid flexibility parameters

21 June 2018

1 reference

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Functional sites in protein families uncovered via an objective and automated graph theoretic approach

21 June 2018

1 reference

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21 June 2018

1 reference

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Scoring residue conservation

21 June 2018

1 reference

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THEMATICS: a simple computational predictor of enzyme function from structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Prediction of functionally important residues based solely on the computed energetics of protein structure.

21 June 2018

1 reference

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Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.

21 June 2018

1 reference

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Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis.

21 June 2018

1 reference

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21 June 2018

The Protein Data Bank

1 reference

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Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

21 June 2018

1 reference

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MOLMOL: a program for display and analysis of macromolecular structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

An evolutionary trace method defines binding surfaces common to protein families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

The interpretation of protein structures: Estimation of static accessibility

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Evolutionary trace analysis of scorpion toxins specific for K-channels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

How Well is Enzyme Function Conserved as a Function of Pairwise Sequence Identity?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Using a neural network and spatial clustering to predict the location of active sites in enzymes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Analysis of catalytic residues in enzyme active sites

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

Protein thermal stability: insights from atomic displacement parameters (B values).

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1534064

An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16790052

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-312

1 reference

journals/bmcbi/PetrovaW06

24 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference