(Q35020464)

5 August 2017

title

Quantitative assessment of dictionary-based protein named entity tagging (English)

1 reference

5 August 2017

5

Carol Friedman

1 reference

5 August 2017

4

Cathy Wu

1 reference

5 August 2017

Hongfang Liu

1

1 reference

5 August 2017

Zhang-Zhi Hu

series ordinal

2

1 reference

5 August 2017

Manabu Torii

series ordinal

3

1 reference

5 August 2017

publication date

23 June 2006

1 reference

Journal of the American Medical Informatics Association

5 August 2017

published in

1 reference

5 August 2017

volume

13

1 reference

5 August 2017

issue

5

1 reference

5 August 2017

page(s)

497-507

1 reference

Automatic pathway building in biological association networks

5 August 2017

cites work

1 reference

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Data preparation and interannotator agreement: BioCreAtIvE task 1B

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Overview of BioCreAtIvE task 1B: normalized gene lists

8 July 2018

1 reference

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8 July 2018

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Overview of BioCreAtIvE: critical assessment of information extraction for biology

8 July 2018

1 reference

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Thesaurus-based disambiguation of gene symbols

8 July 2018

1 reference

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8 July 2018

1 reference

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Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Biomedical term mapping databases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Term identification in the biomedical literature

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Gene name ambiguity of eukaryotic nomenclatures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

A multi-aspect comparison study of supervised word sense disambiguation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Extracting human protein interactions from MEDLINE using a full-sentence parser

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

The iProClass integrated database for protein functional analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Mining the biomedical literature in the genomic era: an overview

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

The Unified Medical Language System (UMLS): integrating biomedical terminology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

PIRSF: family classification system at the Protein Information Resource

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

MeKE: discovering the functions of gene products from biomedical literature via sentence alignment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Extracting synonymous gene and protein terms from biological literature

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Playing biology's name game: identifying protein names in scientific text.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Accomplishments and challenges in literature data mining for biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Tagging gene and protein names in biomedical text

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

A literature network of human genes for high-throughput analysis of gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Clustering of highly homologous sequences to reduce the size of large protein databases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

EDGAR: extraction of drugs, genes and relations from the biomedical literature

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Isolation and chromosomal assignment of human genes encoding cofactor of LIM homeodomain proteins, CLIM1 and CLIM2

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Characterization of the human 36-kDa carboxyl terminal LIM domain protein (hCLIM1).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Toward information extraction: identifying protein names from biological papers.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

GIS: a biomedical text-mining system for gene information discovery.

8 July 2018

1 reference

https://api.crossref.org/works/10.1197%2FJAMIA.M2085

Disambiguating proteins, genes, and RNA in text: a machine learning approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1197%2FJAMIA.M2085

Disambiguating ambiguous biomedical terms in biomedical narrative text: an unsupervised method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1197%2FJAMIA.M2085

Resolving abbreviations to their senses in Medline.

21 January 2018

1 reference

https://api.crossref.org/works/10.1197%2FJAMIA.M2085

GAPSCORE: finding gene and protein names one word at a time

21 January 2018

1 reference

https://api.crossref.org/works/10.1197%2FJAMIA.M2085

Protein names and how to find them.

21 January 2018

1 reference

https://api.crossref.org/works/10.1197%2FJAMIA.M2085

Event extraction from biomedical papers using a full parser.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Bidirectional incremental parsing for automatic pathway identification with combinatory categorial grammar.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Constructing biological knowledge bases by extracting information from text sources.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

An online literature mining tool for protein phosphorylation

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1561801

Identifying the Interaction between Genes and Gene Products Based on Frequently Seen Verbs in Medline Abstracts

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16799122

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

BioThesaurus: a web-based thesaurus of protein and gene names

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16799122

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1197/JAMIA.M2085

1 reference

5 August 2017

DBLP publication ID

journals/jamia/LiuHTWF06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 August 2017

1 reference