(Q35020959)

5 August 2017

1 reference

title

Dynamic mechanism of nick recognition by DNA ligase (English)

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5 August 2017

Alexei V Cherepanov

1

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5 August 2017

Simon de Vries

series ordinal

2

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5 August 2017

language of work or name

English

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publication date

1 December 2002

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5 August 2017

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5 August 2017

volume

269

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5 August 2017

issue

24

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5 August 2017

page(s)

5993-5999

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DNA ligase: structure, mechanism, and function

5 August 2017

cites work

1 reference

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DNA ligase I selectively affects DNA synthesis by DNA polymerases delta and epsilon suggesting differential functions in DNA replication and repair

21 January 2018

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DNA ligase I is recruited to sites of DNA replication by an interaction with proliferating cell nuclear antigen: identification of a common targeting mechanism for the assembly of replication factories

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Delayed DNA joining at 3' mismatches by human DNA ligases

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Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair

21 January 2018

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Crystal structure of an Xrcc4-DNA ligase IV complex

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DNA ligase IV is essential for V(D)J recombination and DNA double-strand break repair in human precursor lymphocytes

21 January 2018

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Cellular and biochemical impact of a mutation in DNA ligase IV conferring clinical radiosensitivity

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DNA ligase IV-deficient cells are more resistant to ionizing radiation in the absence of Ku70: Implications for DNA double-strand break repair

21 January 2018

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Mammalian DNA ligase III: molecular cloning, chromosomal localization, and expression in spermatocytes undergoing meiotic recombination

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Intermediates in V(D)J recombination: a stable RAG1/2 complex sequesters cleaved RSS ends.

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Kinetic mechanism of the Mg2+-dependent nucleotidyl transfer catalyzed by T4 DNA and RNA ligases

21 January 2018

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Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7

21 January 2018

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21 January 2018

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Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining

21 January 2018

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Crystal structure of NAD+-dependent DNA ligase: modular architecture and functional implications

21 January 2018

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Structure of the adenylation domain of an NAD+-dependent DNA ligase

21 January 2018

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NAD+-dependent DNA ligase encoded by a eukaryotic virus

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DNA ligases in the repair and replication of DNA.

21 January 2018

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Nick recognition by DNA ligases

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Role of nucleotidyl transferase motif V in strand joining by chlorella virus DNA ligase

21 January 2018

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Closing the gap on DNA ligase

21 January 2018

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X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes

21 January 2018

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Characterization of proteolytic fragments of bacteriophage T7 DNA ligase

21 January 2018

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Footprinting of Chlorella virus DNA ligase bound at a nick in duplex DNA.

21 January 2018

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Structural and mechanistic conservation in DNA ligases

21 January 2018

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DNA polymerases: structural diversity and common mechanisms

21 January 2018

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Polymerase structures and function: variations on a theme?

21 January 2018

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Structure of the replicating complex of a pol alpha family DNA polymerase

21 January 2018

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Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes

21 January 2018

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Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism

21 January 2018

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Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

21 January 2018

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

21 January 2018

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A-form conformational motifs in ligand-bound DNA structures

21 January 2018

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Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal

21 January 2018

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A model for DNA polymerase translocation: worm-like movement of DNA within the binding cleft

21 January 2018

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Structure of DNA polymerase I Klenow fragment bound to duplex DNA

21 January 2018

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Evidence of DNA bending in transcription complexes imaged by scanning force microscopy

21 January 2018

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Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

21 January 2018

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Characterization of the "helix clamp" motif of HIV-1 reverse transcriptase using MALDI-TOF MS and surface plasmon resonance

21 January 2018

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The solution structure of the r(gcg)d(TATACCC):d(GGGTATACGC) Okazaki fragment contains two distinct duplex morphologies connected by a junction

21 January 2018

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Protein-DNA interactions: A structural analysis

21 January 2018

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DNA structure: what's in charge?

21 January 2018

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A base-centred explanation of the B-to-A transition in DNA.

21 January 2018

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An analysis of the relationship between hydration and protein-DNA interactions

21 January 2018

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Sequence-specific recognition of double helical nucleic acids by proteins

21 January 2018

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Comparison of nucleotide interactions in water, proteins, and vacuum: model for DNA polymerase fidelity

21 January 2018

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Salt induced B----A transition of poly(dG).poly(dC) and the stabilization of A form by its methylation

21 January 2018

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The B to A transition of DNA in solution

21 January 2018

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Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes

21 January 2018

1 reference

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Determinants of repressor/operator recognition from the structure of the trp operator binding site.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

B-form to A-form conversion by a 3'-terminal ribose: crystal structure of the chimera d(CCACTAGTG)r(G)

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairing

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Prokaryotic DNA ligases unwind superhelical DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Molecular Architecture and Biological Reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Application of a Theory of Enzyme Specificity to Protein Synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Chlorella virus DNA ligase: nick recognition and mutational analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Apparent pore size of polyacrylamide gels: comparison of gels cast and run in Tris-acetate-EDTA and Tris-borate-EDTA buffers

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Ligation reaction specificities of an NAD(+)-dependent DNA ligase from the hyperthermophile Aquifex aeolicus

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

DNA structure and polymerase fidelity

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Specificity and fidelity of strand joining by Chlorella virus DNA ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

DNA ligase IV from HeLa cell nuclei

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Structures for the polynucleotide complexes poly(dA) with poly (dT) and poly(dT) with poly(dA) with poly (dT).

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

A-DNA in solution as studied by diverse approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Sequence-dependent B<-->A transition in DNA evaluated with dimeric and trimeric scales

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

The DNA strand in DNA.RNA hybrid duplexes is neither B-form nor A-form in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

An A-type double helix of DNA having B-type puckering of the deoxyribose rings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Crystal structures of B-form DNA-RNA chimers complexed with distamycin

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Water: an integral part of nucleic acid structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

The action of DNA ligase at abasic sites in DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Crystallization and preliminary x-ray crystallographic analysis of NAD+-dependent DNA ligase from Thermus filiformis

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Common fold, common function, common origin?

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Functional domains of an ATP-dependent DNA ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Modeling DNA deformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Ligation of RNA-Containing Duplexes by Vaccinia DNA Ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

Characterization of DNA ligase from the fungus Coprinus cinereus

21 January 2018

1 reference

https://api.crossref.org/works/10.1046%2FJ.1432-1033.2002.03309.X

10.1046/J.1432-1033.2002.03309.X

21 January 2018

Identifiers

DOI

1 reference

5 August 2017

1 reference