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Modeling DNA deformations
scientific article published on 01 June 2000
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Europe PubMed Central
PubMed ID
10851199
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10851199%20AND%20SRC:MED&resulttype=core&format=json
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7 November 2019
title
Modeling DNA deformations
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
10851199
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10851199%20AND%20SRC:MED&resulttype=core&format=json
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7 November 2019
author name string
W K Olson
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1
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Europe PubMed Central
PubMed ID
10851199
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7 November 2019
V B Zhurkin
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2
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Europe PubMed Central
PubMed ID
10851199
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7 November 2019
publication date
1 June 2000
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Europe PubMed Central
PubMed ID
10851199
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7 November 2019
published in
Current Opinion in Structural Biology
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Europe PubMed Central
PubMed ID
10851199
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10851199%20AND%20SRC:MED&resulttype=core&format=json
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7 November 2019
volume
10
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Europe PubMed Central
PubMed ID
10851199
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10851199%20AND%20SRC:MED&resulttype=core&format=json
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7 November 2019
issue
3
1 reference
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Europe PubMed Central
PubMed ID
10851199
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10851199%20AND%20SRC:MED&resulttype=core&format=json
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7 November 2019
page(s)
286-297
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Europe PubMed Central
PubMed ID
10851199
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7 November 2019
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Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.
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Straightening out the bends in curved DNA
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7 January 2021
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Sequence Elements Responsible for DNA Curvature
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Molecular dynamics studies of axis bending in d(G5-(GA4T4C)2-C5) and d(G5-(GT4A4C)2-C5): effects of sequence polarity on DNA curvature
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Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn.
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Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.
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Sequence-dependent anisotropic flexibility of B-DNA. A conformational study
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Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees
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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn
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Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
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GalR mutants defective in repressosome formation
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Sequence dependence of the helical repeat of DNA in solution
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Iron(II) EDTA used to measure the helical twist along any DNA molecule
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Torsional flexibility of B-DNA as revealed by conformational analysis.
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DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI
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An analysis of the relationship between hydration and protein-DNA interactions
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Role of sugar re-puckering in the transition of A and B forms of DNA in solution. A molecular dynamics study
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Structural equilibrium of DNA represented with different force fields
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The structure of B-DNA in oriented fibers
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Molecular dynamics and continuum solvent studies of the stability of polyG-polyC and polyA-polyT DNA duplexes in solution.
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Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules
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DNA: an extensible molecule.
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Molecular Dynamics Simulation of DNA Stretching Is Consistent with the Tension Observed for Extension and Strand Separation and Predicts a Novel Ladder Structure
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Modelling extreme stretching of DNA.
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7 January 2021
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Stretched and overwound DNA forms a Pauling-like structure with exposed bases
1 reference
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7 January 2021
based on heuristic
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Modeling the mechanics of a DNA oligomer
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7 January 2021
based on heuristic
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DNA stretching and compression: large-scale simulations of double helical structures
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7 January 2021
based on heuristic
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Modeling DNA deformations induced by minor groove binding proteins
1 reference
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7 January 2021
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Spatial configuration of ordered polynucleotide chains: a novel double helix
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structure and function of RecA-DNA complexes.
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
A parallel DNA triplex as a model for the intermediate in homologous recombination.
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
A model for parallel triple helix formation by RecA: single-single association with a homologous duplex via the minor groove
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
A molecular model for RecA-promoted strand exchange via parallel triple-stranded helices
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
RecA.oligonucleotide filaments bind in the minor groove of double-stranded DNA.
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Sequence-specific covalent modification of DNA by cross-linking oligonucleotides. Catalysis by RecA and implication for the mechanism of synaptic joint formation
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7 January 2021
based on heuristic
inferred from DOI database lookup
DNA strand exchange mediated by the Escherichia coli RecA protein initiates in the minor groove of double-stranded DNA.
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Radioprobing of a RecA-three-stranded DNA complex with iodine 125: evidence for recognition of homology in the major groove of the target duplex
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Structural basis for initiation of transcription from an RNA polymerase-promoter complex
1 reference
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7 January 2021
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inferred from DOI database lookup
Structure of a transcribing T7 RNA polymerase initiation complex
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Influence of nucleosome structure on the three-dimensional folding of idealized minichromosomes
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
The helical periodicity of DNA on the nucleosome
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Pulling chromatin fibers: computer simulations of direct physical micromanipulations
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7 January 2021
based on heuristic
inferred from DOI database lookup
Catastrophic variation of twist and writhing of circular DNAs with constraint?
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0959-440X(00)00086-5
1 reference
stated in
Europe PubMed Central
PubMed ID
10851199
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10851199%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 November 2019
PubMed ID
10851199
1 reference
stated in
Europe PubMed Central
PubMed ID
10851199
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10851199%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 November 2019
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