(Q33632627)

28 July 2017

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title

Collective variable modelling of nucleic acids (English)

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28 July 2017

1

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28 July 2017

Lavery R

2

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28 July 2017

1 April 1999

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Current Opinion in Structural Biology

28 July 2017

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28 July 2017

9

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28 July 2017

2

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28 July 2017

170-176

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Computer analysis of conformational possibilities of double‐helical DNA

28 July 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Interactions of molecules with nucleic acids. I. An algorithm to generate nucleic acid structures with an application to the B-DNA structure and a counterclockwise helix

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Unusual DNA conformations.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Simulations of the molecular dynamics of nucleic acids

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https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Construction of double-helical DNA structures based on dinucleotide building blocks.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Modeling active RNA structures using the intersection of conformational space: application to the lead-activated ribozyme.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

The combination of symbolic and numerical computation for three-dimensional modeling of RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Predicting RNA structures: the model of the RNA element binding Rev meets the NMR structure.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

A computational approach to modeling nucleic acid hairpin structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

DNA base-stacking interactions: a comparison of theoretical calculations with oligonucleotide X-ray crystal structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Sequence-dependent DNA structure: the role of the sugar-phosphate backbone

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Analysis of the stability of looped-out and stacked-in conformations of an adenine bulge in DNA using a continuum model for solvent and ions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Triad-DNA: a model for trinucleotide repeats

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Modeling DNA deformations induced by minor groove binding proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Architectural accommodation in the complex of four p53 DNA binding domain peptides with the p21/waf1/cip1 DNA response element

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Sequence specificity of bacteriophage 434 repressor-operator complexation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Efficient Monte Carlo method for simulation of fluctuating conformations of native proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Torsion angle dynamics for NMR structure calculation with the new program DYANA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Chirality errors in nucleic acid structures.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

DNA: an extensible molecule.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Stretching and breaking duplex DNA by chemical force microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

A model for parallel triple helix formation by RecA: single-single association with a homologous duplex via the minor groove

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Search for rigid sub domains in DNA from molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Simulation of the conformation and dynamics of a double-helical model for DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

The effect of intrinsic curvature on conformational properties of circular DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

The elastic rod model for DNA and its application to the tertiary structure of DNA minicircles in mononucleosomes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Simulating DNA at low resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Modeling superhelical DNA: recent analytical and dynamic approaches.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

A Brownian dynamics program for the simulation of linear and circular DNA and other wormlike chain polyelectrolytes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Internal motion of supercoiled DNA: brownian dynamics simulations of site juxtaposition.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Extension of torsionally stressed DNA by external force

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

The elasticity of a single supercoiled DNA molecule

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Configurational transitions in Fourier series-represented DNA supercoils

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Modeling chain folding in protein-constrained circular DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Remarks on discrete and continuous large-scale models of DNA dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Chromatin structure and chromosome aberrations: modeling of damage induced by isotropic and localized irradiation.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Major groove binding of the tRNA/mRNA complex to the 16 S ribosomal RNA decoding site

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation model.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

Pf1 virus structure: helical coat protein and DNA with paraxial phosphates

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980024-4

7 January 2021

10.1016/S0959-440X(99)80024-4

Identifiers

DOI

1 reference

28 July 2017

1 reference

PubMed ID

10322207