(Q35024647)

5 August 2017

title

Compact representation of k-mer de Bruijn graphs for genome read assembly (English)

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5 August 2017

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Einar Andreas Rødland

series ordinal

1

object named as

Einar Andreas Rødland

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publication date

23 October 2013

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5 August 2017

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5 August 2017

volume

14

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5 August 2017

page(s)

313

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Creative Commons Attribution 2.0 Generic

5 August 2017

copyright license

start time

23 October 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

Exploiting sparseness in de novo genome assembly

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

Efficient de novo assembly of large genomes using compressed data structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

Efficient counting of k-mers in DNA sequences using a bloom filter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

Succinct data structures for assembling large genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

Quake: quality-aware detection and correction of sequencing errors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

ABySS: a parallel assembler for short read sequence data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

SSAHA: a fast search method for large DNA databases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015147

Reducing storage requirements for biological sequence comparison.

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-313

Reptile: representative tiling for short read error correction

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-313

21 January 2018

Identifiers

DOI

10.1186/1471-2105-14-313

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5 August 2017

DBLP publication ID

journals/bmcbi/Rodland13

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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5 August 2017

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