(Q35026878)

5 August 2017

title

Identification of outer membrane proteins from an Antarctic bacterium Pseudomonas syringae Lz4W. (English)

1 reference

5 August 2017

1 reference

Pseudomonas syringae

1 reference

M V Jagannadham

1

1 reference

5 August 2017

Ehab F Abou-Eladab

series ordinal

2

1 reference

5 August 2017

Heramb M Kulkarni

series ordinal

3

1 reference

5 August 2017

publication date

29 March 2011

1 reference

Molecular & Cellular Proteomics

5 August 2017

published in

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5 August 2017

volume

10

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5 August 2017

issue

6

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5 August 2017

page(s)

M110.004549

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

5 August 2017

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8 July 2018

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Identification of proteins from membrane preparations by a combination of MALDI TOF-TOF and LC-coupled linear ion trap MS analysis of an Antarctic bacterium Pseudomonas syringae Lz4W, a strain with unsequenced genome

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Trade-off between high sensitivity and increased potential for false positive peptide sequence matches using a two-dimensional linear ion trap for tandem mass spectrometry-based proteomics

8 July 2018

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Mechanism of bacterial adaptation to low temperature

8 July 2018

1 reference

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Protein cleavage strategies for an improved analysis of the membrane proteome

8 July 2018

1 reference

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Low temperature-induced systems failure in Escherichia coli: insights from rescue by cold-adapted chaperones

8 July 2018

1 reference

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Proteomics of organelles and large cellular structures

8 July 2018

1 reference

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AUDENS: a tool for automated peptide de novo sequencing.

8 July 2018

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Large-scale proteomic analysis of membrane proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

PSORTdb: a protein subcellular localization database for bacteria

8 July 2018

1 reference

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Current two-dimensional electrophoresis technology for proteomics

8 July 2018

1 reference

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Psychrophilic enzymes: hot topics in cold adaptation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

8 July 2018

1 reference

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DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

8 July 2018

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Mass spectrometry-based proteomics

8 July 2018

1 reference

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The application of mass spectrometry to membrane proteomics

8 July 2018

1 reference

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Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications

8 July 2018

1 reference

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RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimises protein identification, and archives data in a relational database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

8 July 2018

1 reference

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Proteomic analysis of the Escherichia coli outer membrane.

8 July 2018

1 reference

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Membrane proteins and proteomics: un amour impossible?

8 July 2018

1 reference

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Probability-based protein identification by searching sequence databases using mass spectrometry data

8 July 2018

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Isolation and identification of Pseudomonas spp. from Schirmacher Oasis, Antarctica

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Aspartate aminotransferase is involved in cold adaptation in psychrophilic Pseudomonas syringae

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

A method to enhance a1 ions and application for peptide sequencing and protein identification.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Identification and network of outer membrane proteins regulating streptomysin resistance in Escherichia coli.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Multidimensional analysis of the insoluble sub-proteome of Oceanobacillus iheyensis HTE831, an alkaliphilic and halotolerant deep-sea bacterium isolated from the Iheya ridge

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

A predictive model for identifying proteins by a single peptide match

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

An enhanced method for peptides sequencing by N-terminal derivatization and MS.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

SPIDER: software for protein identification from sequence tags with de novo sequencing error.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Peptide sequence tags for fast database search in mass-spectrometry.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Exoribonuclease R interacts with endoribonuclease E and an RNA helicase in the psychrotrophic bacterium Pseudomonas syringae Lz4W.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Potential for false positive identifications from large databases through tandem mass spectrometry.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Evaluation of nonionic and zwitterionic detergents as membrane protein solubilizers in two-dimensional electrophoresis

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3108833

Isolation and characterization of the outer-membrane proteins of Burkholderia (Pseudomonas) pseudomallei

25 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21447709

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M110.004549

1 reference

5 August 2017

1 reference

5 August 2017

1 reference