(Q35027106)

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Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.

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26 February 2020

Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes (English)

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26 February 2020

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Nawar F Al-Obaidi

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26 February 2020

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26 February 2020

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26 February 2020

Matthew P. Jacobson

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26 February 2020

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Matthew W Vetting

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26 February 2020

Brian San Francisco

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Jungwook Kim

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Dmitry A Rodionov

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James D Love

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26 February 2020

Ronald D Seidel

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26 February 2020

Andrei L Osterman

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26 February 2020

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16 January 2015

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26 February 2020

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26 February 2020

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26 February 2020

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26 February 2020

909-931

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26 February 2020

Investigating the physiological roles of low-efficiency D-mannonate and D-gluconate dehydratases in the enolase superfamily: pathways for the catabolism of L-gulonate and L-idonate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Comparative genomics and evolution of regulons of the LacI-family transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Discovery of function in the enolase superfamily: D-mannonate and d-gluconate dehydratases in the D-mannonate dehydratase subgroup

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

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Plasmodium gametocyte inhibition identified from a natural-product-based fragment library

1 reference

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Discovery of new enzymes and metabolic pathways by using structure and genome context

1 reference

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Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

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Pythoscape: a framework for generation of large protein similarity networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Tagaturonate-fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

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A thermal stability assay can help to estimate the crystallization likelihood of biological samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

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InterPro in 2011: new developments in the family and domain prediction database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

The Enzyme Function Initiative

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Caught in a TRAP: substrate-binding proteins in secondary transport

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

High-throughput production of human proteins for crystallization: the SGC experience.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

A structural classification of substrate-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

High-throughput expression and purification of membrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Ethanolamine utilization in bacterial pathogens: roles and regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

The crystal structure of UehA in complex with ectoine-A comparison with other TRAP-T binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Non-zinc mediated inhibition of carbonic anhydrases: coumarins are a new class of suicide inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Control of gluconate utilization in Sinorhizobium meliloti

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

MODOMICS: a database of RNA modification pathways. 2008 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

1.55 A structure of the ectoine binding protein TeaA of the osmoregulated TRAP-transporter TeaABC from Halomonas elongata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

The wobble hypothesis revisited: uridine-5-oxyacetic acid is critical for reading of G-ending codons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

A combined approach to improving large-scale production of tobacco etch virus protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Crystal structures of two Bordetella pertussis periplasmic receptors contribute to defining a novel pyroglutamic acid binding DctP subfamily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Mapping the Sinorhizobium meliloti 1021 solute-binding protein-dependent transportome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

The Buccaneer software for automated model building. 1. Tracing protein chains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

8 July 2018

Scaling and assessment of data quality

1 reference

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8 July 2018

Protein production by auto-induction in high density shaking cultures

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A novel putrescine utilization pathway involves gamma-glutamylated intermediates of Escherichia coli K-12.

1 reference

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Coot: model-building tools for molecular graphics

1 reference

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The modified wobble nucleoside uridine-5-oxyacetic acid in tRNAPro(cmo5UGG) promotes reading of all four proline codons in vivo

1 reference

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Glycerol-3-phosphate transporter of Escherichia coli: structure, function and regulation

1 reference

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1 reference

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MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

1 reference

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ARP/wARP and automatic interpretation of protein electron density maps

1 reference

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Recent developments in the PHENIX software for automated crystallographic structure determination

1 reference

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1 reference

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8 July 2018

New type of osmoregulated solute transporter identified in halophilic members of the bacteria domain: TRAP transporter TeaABC mediates uptake of ectoine and hydroxyectoine in Halomonas elongata DSM 2581(T).

1 reference

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Transformation of isopropylamine to L-alaninol by Pseudomonas sp. strain KIE171 involves N-glutamylated intermediates

1 reference

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1 reference

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1 reference

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The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea.

1 reference

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8 July 2018

Use of TLS parameters to model anisotropic displacements in macromolecular refinement

1 reference

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8 July 2018

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1 reference

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1 reference

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8 July 2018

Binding protein-dependent ABC transport system for glycerol 3-phosphate of Escherichia coli

1 reference

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8 July 2018

Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria

1 reference

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8 July 2018

Overexpression, purification, and characterization of VanX, a D-, D-dipeptidase which is essential for vancomycin resistance in Enterococcus faecium BM4147.

1 reference

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8 July 2018

The pathway for L-gulonate catabolism in Escherichia coli K-12 and Salmonella typhimurium LT-2.

1 reference

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8 July 2018

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1 reference

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8 July 2018

Ligation-independent cloning of PCR products (LIC-PCR)

1 reference

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8 July 2018

Identification of a TRAP transporter for malonate transport and its expression regulated by GtrA from Sinorhizobium meliloti

1 reference

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25 October 2018

Direct screening of natural product extracts using mass spectrometry.

1 reference

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25 October 2018

Organic solutes in hyperthermophilic archaea.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

25 October 2018

The substrate-binding protein TeaA of the osmoregulated ectoine transporter TeaABC from Halomonas elongata: purification and characterization of recombinant TeaA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

25 October 2018

Homologs of the vancomycin resistance D-Ala-D-Ala dipeptidase VanX in Streptomyces toyocaensis, Escherichia coli and Synechocystis: attributes of catalytic efficiency, stereoselectivity and regulation with implications for function.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4310620

25 October 2018

The yjjN of E. coli codes for an L-galactonate dehydrogenase and can be used for quantification of L-galactonate and L-gulonate

1 reference

https://pubmed.ncbi.nlm.nih.gov/25540822

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression in Escherichia coli of the putative N-acetylneuraminate lyase gene (nanA) from Haemophilus influenzae: overproduction, purification, and crystallization

1 reference

https://pubmed.ncbi.nlm.nih.gov/25540822

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI501388Y

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Europe PubMed Central

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26 February 2020

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Europe PubMed Central

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26 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25540822%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

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