(Q35036794)

5 August 2017

title

Mining metabolites: extracting the yeast metabolome from the literature (English)

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5 August 2017

4

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5 August 2017

6

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5 August 2017

7

Sophia Ananiadou

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5 August 2017

5

Jun'ichi Tsujii

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5 August 2017

Chikashi Nobata

1

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5 August 2017

Paul D Dobson

series ordinal

2

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5 August 2017

Syed A Iqbal

series ordinal

3

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5 August 2017

language of work or name

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31 October 2010

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5 August 2017

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5 August 2017

volume

7

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5 August 2017

issue

1

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5 August 2017

page(s)

94-101

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Text mining meets workflow: linking U-Compare with Taverna

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Event extraction for systems biology by text mining the literature

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Building a high-quality sense inventory for improved abbreviation disambiguation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Disambiguating the species of biomedical named entities using natural language parsers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

KEGG for representation and analysis of molecular networks involving diseases and drugs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

A dictionary to identify small molecules and drugs in free text

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Journal club. A systems biologist ponders how disparate ideas can sometimes come together beautifully

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Extraction of CYP chemical interactions from biomedical literature using natural language processing methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

U-Compare: share and compare text mining tools with UIMA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Computational modeling of biochemical networks using COPASI

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Evaluating contributions of natural language parsers to protein-protein interaction extraction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

'Metabolite-likeness' as a criterion in the design and selection of pharmaceutical drug libraries

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

How to make the most of NE dictionaries in statistical NER.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Cascaded classifiers for confidence-based chemical named entity recognition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

HMDB: a knowledgebase for the human metabolome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

FACTA: a text search engine for finding associated biomedical concepts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Detection of IUPAC and IUPAC-like chemical names

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Text processing through Web services: calling Whatizit

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

ChEBI: a database and ontology for chemical entities of biological interest

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

A scalable machine-learning approach to recognize chemical names within large text databases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Text mining and its potential applications in systems biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Mining chemical structural information from the drug literature

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

From genomics to chemical genomics: new developments in KEGG

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Implementing the iHOP concept for navigation of biomedical literature

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Exploring the boundaries: gene and protein identification in biomedical text

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Overview of BioCreAtIvE: critical assessment of information extraction for biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

The ENZYME database in 2000

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

KEGG: kyoto encyclopedia of genes and genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Analysis of biomedical text for chemical names: a comparison of three methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111869

Statistical strategies for avoiding false discoveries in metabolomics and related experiments

8 July 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11306-010-0251-6

Improving the quality of published chemical names with nomenclature software.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11306-010-0251-6

GENIA corpus--semantically annotated corpus for bio-textmining

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11306-010-0251-6

Chemical documents: machine understanding and automated information extraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11306-010-0251-6

Improving the performance of dictionary-based approaches in protein name recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11306-010-0251-6

10.1007/S11306-010-0251-6

21 January 2018

Identifiers

DOI

1 reference

5 August 2017

1 reference

5 August 2017

1 reference