(Q35039404)

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CRISPR-MVLST subtyping of Salmonella enterica subsp. enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates

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scholarly article

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Europe PubMed Central

PubMed publication ID

5 August 2017

CRISPR-MVLST subtyping of Salmonella enterica subsp. enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates (English)

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

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Salmonella enterica

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Rodolphe Barrangou

object named as

Rodolphe Barrangou

4

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author name string

Nikki Shariat

1

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Carol H Sandt

2

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Michael J DiMarzio

3

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Edward G Dudley

5

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Europe PubMed Central

PubMed publication ID

5 August 2017

publication date

12 November 2013

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Europe PubMed Central

PubMed publication ID

5 August 2017

BMC Microbiology

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Europe PubMed Central

PubMed publication ID

5 August 2017

13

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Europe PubMed Central

PubMed publication ID

5 August 2017

254

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

https://scigraph.springernature.com/pub.10.1186/1471-2180-13-254

0 references

Antibiotic Resistance in Salmonella enterica Serovar Typhimurium Associates with CRISPR Sequence Type

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840669

8 July 2018

Subtyping of Salmonella enterica serovar Newport outbreak isolates by CRISPR-MVLST and determination of the relationship between CRISPR-MVLST and PFGE results

1 reference

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8 July 2018

Specific detection of enteroaggregative hemorrhagic Escherichia coli O104:H4 strains by use of the CRISPR locus as a target for a diagnostic real-time PCR.

1 reference

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8 July 2018

Routine use of microbial whole genome sequencing in diagnostic and public health microbiology

1 reference

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8 July 2018

CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections

1 reference

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Genomic variation in Salmonella enterica core genes for epidemiological typing

1 reference

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High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach

1 reference

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1 reference

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A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type

1 reference

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1 reference

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Subtyping Salmonella enterica serovar enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs)

1 reference

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Foodborne illness acquired in the United States--major pathogens

1 reference

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Pulsed field gel electrophoresis: A review of application and interpretation in the molecular epidemiology of infectious disease

1 reference

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8 July 2018

The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella

1 reference

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Development of a new nomenclature for Salmonella typhimurium multilocus variable number of tandem repeats analysis (MLVA).

1 reference

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Enhanced subtyping scheme for Salmonella enteritidis

1 reference

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Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses.

1 reference

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Comparison of molecular typing methods for the differentiation of Salmonella foodborne pathogens

1 reference

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Recent developments and future prospects in subtyping of foodborne bacterial pathogens

1 reference

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8 July 2018

Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840669

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

1 reference

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The key role of pulsed-field gel electrophoresis in investigation of a large multiserotype and multistate food-borne outbreak of Salmonella infections centered in Pennsylvania

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840669

8 July 2018

Variable-number tandem repeats that are useful in genotyping isolates of Salmonella enterica subsp. enterica serovars Typhimurium and Newport

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840669

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Discrimination within phenotypically closely related definitive types of Salmonella enterica serovar typhimurium by the multiple amplification of phage locus typing technique

1 reference

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Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840669

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DNA fingerprinting of Salmonella enterica subsp. enterica serovar typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci

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1 reference

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Fluorescent amplified-fragment length polymorphism genotyping of Salmonella enterica subsp. enterica serovars and comparison with pulsed-field gel electrophoresis typing

1 reference

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1 reference

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Annual cost of illness and quality-adjusted life year losses in the United States due to 14 foodborne pathogens.

1 reference

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1 reference

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Genotypic characterization of Salmonella by multilocus sequence typing, pulsed-field gel electrophoresis and amplified fragment length polymorphism.

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1 reference

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1 reference

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Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. enterica

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-254

21 January 2018

The combination of CRISPR-MVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp. enterica serovar Enteritidis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-254

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1 reference

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1 reference

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Consensus guidelines for appropriate use and evaluation of microbial epidemiologic typing systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/24219629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of clustered regularly interspaced short palindromic repeat sequence polymorphisms for specific detection of enterohemorrhagic Escherichia coli strains of serotypes O26:H11, O45:H2, O103:H2, O111:H8, O121:H19, O145:H28, and O157:H7 by real-time

1 reference

https://pubmed.ncbi.nlm.nih.gov/24219629

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/1471-2180-13-254

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

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PMC publication ID

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Europe PubMed Central

PubMed publication ID

5 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

ResearchGate publication ID

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