(Q35040930)

6 August 2017

title

Thermodynamic and kinetic basis for recognition and repair of 8-oxoguanine in DNA by human 8-oxoguanine-DNA glycosylase (English)

1 reference

6 August 2017

Oleg O Kirpota

1

1 reference

6 August 2017

Anton V Endutkin

2

1 reference

6 August 2017

Michail P Ponomarenko

3

1 reference

6 August 2017

Petr M Ponomarenko

4

1 reference

6 August 2017

Dmitry O Zharkov

5

1 reference

6 August 2017

Georgy A Nevinsky

6

1 reference

6 August 2017

language of work or name

English

0 references

publication date

22 February 2011

1 reference

6 August 2017

published in

Nucleic Acids Research

1 reference

6 August 2017

volume

39

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6 August 2017

issue

11

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6 August 2017

page(s)

4836-4850

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Creative Commons Attribution-NonCommercial 2.5 Generic

6 August 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Uracil-DNA glycosylase: Structural, thermodynamic and kinetic aspects of lesion search and recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

The role of dynamic conformational ensembles in biomolecular recognition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Mechanism of interaction between human 8-oxoguanine-DNA glycosylase and AP endonuclease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Spontaneous sharp bending of DNA: role of melting bubbles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Kinetics of substrate recognition and cleavage by human 8-oxoguanine-DNA glycosylase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Formation of nucleoprotein RecA filament on single-stranded DNA. Analysis by stepwise increase in ligand complexity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

The DNA trackwalkers: principles of lesion search and recognition by DNA glycosylases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placenta.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Human deoxyribonucleases.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Recognition of damaged DNA by Escherichia coli Fpg protein: insights from structural and kinetic data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Dynamic, thermodynamic, and kinetic basis for recognition and transformation of DNA by human immunodeficiency virus type 1 integrase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Reciprocal "flipping" underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Interaction of endonuclease ecoRI with short specific and nonspecific oligonucleotides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

An overview of the structures of protein-DNA complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Substrate specificity and reaction mechanism of murine 8-oxoguanine-DNA glycosylase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Excision of oxidatively damaged DNA bases by the human alpha-hOgg1 protein and the polymorphic alpha-hOgg1(Ser326Cys) protein which is frequently found in human populations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Uracil DNA glycosylase: interpretation of X-ray data in the light of kinetic and thermodynamic studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

The free radical theory of aging matures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

The algorithm of estimation of the Km values for primers in DNA synthesis catalyzed by human DNA polymerase alpha.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Common DNA structural features exhibited by eukaryotic ribosomal gene promoters.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Identification of a DNA structural motif that includes the binding sites for Sp1, p53 and GA-binding protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Bending and curvature calculations in B-DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Uracil DNa-glycosylase from HeLa cells: general properties, substrate specificity and effect of uracil analogs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Predicting DNA duplex stability from the base sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Structure-function analysis of mononucleotides and short oligonucleotides in the priming of enzymatic DNA synthesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Structural aspects of protein-DNA recognition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

The Mechanism of Recognition of Templates By DNA Polymerases From Pro- and Eukaryotes as Revealed By Affinity Modification Data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

Generating programs for predicting the activity of functional sites.

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1333

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1333

Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1333

The selection and characterisation of two novel mutations in the overlapping promoters of the Escherichia coli galactose operon.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1333

Role of base-backbone and base-base interactions in alternating DNA conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1333

Promoter helical structure variation at the Escherichia coli polymerase interaction sites

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

[Computer analysis of conformational features of the eukaryotic TATA-box DNA promotors]

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3113562

[The mechanism of the supercoiled DNA recognition by eukaryotic type I topoisomerases. I. The enzyme interaction with nonspecific oligonucleotides]

9 December 2018

1 reference

12 December 2020

[The mechanism of supercoiled DNA recognition by eukaryotic type I topoisomerases. II. A comparison of the enzyme interaction with specific and nonspecific oligonucleotides]

1 reference

12 December 2020

Kinetic conformational analysis of human 8-oxoguanine-DNA glycosylase

1 reference

12 December 2020

Application of the bootstrap statistical method to the tau-decay-mode problem

1 reference

12 December 2020

Single-stranded oligodeoxyribonucleotides are substrates of Fpg protein from Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKQ1333

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference