(Q35047548)

6 August 2017

title

Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates (English)

1 reference

6 August 2017

Emeric Figuet

1

1 reference

6 August 2017

Marion Ballenghien

series ordinal

2

1 reference

6 August 2017

Jonathan Romiguier

series ordinal

3

1 reference

6 August 2017

Nicolas Galtier

series ordinal

4

1 reference

6 August 2017

publication date

19 December 2014

1 reference

Genome Biology and Evolution

6 August 2017

published in

1 reference

6 August 2017

volume

7

1 reference

6 August 2017

issue

1

1 reference

6 August 2017

page(s)

240-250

1 reference

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

6 August 2017

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A fine-scale recombination map of the human-chimpanzee ancestor reveals faster change in humans than in chimpanzees and a strong impact of GC-biased gene conversion

8 July 2018

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The first Chameleon transcriptome: comparative genomic analysis of the OXPHOS system reveals loss of COX8 in Iguanian lizards

8 July 2018

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8 July 2018

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Homoeologous chromosomes of Xenopus laevis are highly conserved after whole-genome duplication

8 July 2018

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Molecular cytogenetic map of the central bearded dragon, Pogona vitticeps (Squamata: Agamidae).

8 July 2018

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A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

8 July 2018

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Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype

8 July 2018

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The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

8 July 2018

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A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

8 July 2018

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Inference of the protokaryotypes of amniotes and tetrapods and the evolutionary processes of microchromosomes from comparative gene mapping

8 July 2018

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Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC(3) profiling in snake.

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Recombination is associated with the evolution of genome structure and worker behavior in honey bees

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map

8 July 2018

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De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Resolution of ray-finned fish phylogeny and timing of diversification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Evidence for widespread GC-biased gene conversion in eukaryotes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Comparative RNA sequencing reveals substantial genetic variation in endangered primates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

The genome of the green anole lizard and a comparative analysis with birds and mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

The Anolis lizard genome: an amniote genome without isochores

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Ongoing GC-biased evolution is widespread in the human genome and enriched near recombination hot spots

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Three tiers of genome evolution in reptiles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Crocodilian phylogeny inferred from twelve mitochondrial protein-coding genes, with new complete mitochondrial genomic sequences for Crocodylus acutus and Crocodylus novaeguineae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Dynamic evolution of base composition: causes and consequences in avian phylogenomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Meiotic recombination favors the spreading of deleterious mutations in human populations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Detecting positive selection within genomes: the problem of biased gene conversion

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Genome evolution in Reptilia, the sister group of mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Surprising fitness consequences of GC-biased gene conversion: I. Mutation load and inbreeding depression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Two-parameter characterization of chromosome-scale recombination rate.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Biased gene conversion and the evolution of mammalian genomic landscapes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Can GC content at third-codon positions be used as a proxy for isochore composition?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

The evolution of isochore patterns in vertebrate genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Hotspots of biased nucleotide substitutions in human genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

The impact of recombination on nucleotide substitutions in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Biased clustered substitutions in the human genome: the footprints of male-driven biased gene conversion

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

An analysis of the gene complement of a marsupial, Monodelphis domestica: evolution of lineage-specific genes and giant chromosomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Eukaryotic genome size databases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Exceptionally high levels of recombination across the honey bee genome.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Diversity in isochore structure among cold-blooded vertebrates based on GC content of coding and non-coding sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Fixation biases affecting human SNPs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Biased gene conversion: implications for genome and sex evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Recombination explains isochores in mammalian genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Analysis of the phylogenetic distribution of isochores in vertebrates and a test of the thermal stability hypothesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

The evolution of isochores

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Initial sequencing and analysis of the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Isochores and the evolutionary genomics of vertebrates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Warm-blooded isochore structure in Nile crocodile and turtle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Chiasma frequency, distribution and interference maps of mouse autosomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

The vertebrate genome: isochores and evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Compositional transitions in the nuclear genomes of cold-blooded vertebrates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316630

Turtle isochore structure is intermediate between amphibians and other amniotes

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Cytosine deamination plays a primary role in the evolution of mammalian isochores

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Impact of mating systems on patterns of sequence polymorphism in flowering plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Interaction between selection and biased gene conversion in mammalian protein-coding sequence evolution revealed by a phylogenetic covariance analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Phylogenetic patterns of GC-biased gene conversion in placental mammals and the evolutionary dynamics of recombination landscapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Recombination drives the evolution of GC-content in the human genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Genomic evidence for large, long-lived ancestors to placental mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Patterns and evolution of nucleotide landscapes in seed plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Male-driven biased gene conversion governs the evolution of base composition in human alu repeats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Phylogenies and the Comparative Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

Patterns of Vertebrate Isochore Evolution Revealed by Comparison of Expressed Mammalian, Avian, and Crocodilian Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

The karyotype of Alligator mississippiensis, and chromosomal mapping of the ZFY/X homologue, Zfc

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU277

GC-Biased Gene Conversion Impacts Ribosomal DNA Evolution in Vertebrates, Angiosperms, and Other Eukaryotes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25527834

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Recombination and mammalian genome evolution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25527834

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVU277

1 reference

release_ghnsvcvogffpjakhmbefnz4kvu

6 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ghnsvcvogffpjakhmbefnz4kvu

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

4316630

1 reference

6 August 2017

1 reference