(Q35051859)

6 August 2017

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions (English)

1 reference

6 August 2017

1 reference

3

Manolis Kellis

1 reference

6 August 2017

Michael F Lin

1

1 reference

PubMed ID

21685081

6 August 2017

Irwin Jungreis

series ordinal

2

1 reference

PubMed ID

21685081

6 August 2017

language of work or name

English

0 references

publication date

1 July 2011

1 reference

6 August 2017

1 reference

6 August 2017

27

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6 August 2017

i275-82

1 reference

6 August 2017

13

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Creative Commons Attribution-NonCommercial 2.5 Generic

6 August 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Comparative functional genomics of the fission yeasts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

RNA sequencing: advances, challenges and opportunities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Identification of functional elements and regulatory circuits by Drosophila modENCODE

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Models of coding sequence evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Investigating protein-coding sequence evolution with probabilistic codon substitution models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Steady progress and recent breakthroughs in the accuracy of automated genome annotation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Distinguishing protein-coding and noncoding genes in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Evolution of genes and genomes on the Drosophila phylogeny

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

PAML 4: phylogenetic analysis by maximum likelihood

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

An empirical codon model for protein sequence evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Aligning multiple genomic sequences with the threaded blockset aligner

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Comparison of various algorithms for recognizing short coding sequences of human genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Sequencing and comparison of yeast species to identify genes and regulatory elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

An expectation maximization algorithm for training hidden substitution models.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Improved microbial gene identification with GLIMMER

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Estimation of reversible substitution matrices from multiple pairs of sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

A codon-based model of nucleotide substitution for protein-coding DNA sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Phylogenetic estimation of context-dependent substitution rates by maximum likelihood

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3117341

10.1093/BIOINFORMATICS/BTR209

25 October 2018

Identifiers

DOI

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kg2lub54qbgmzj6mdytvvge7km

30 July 2022

journals/bioinformatics/LinJK11

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_kg2lub54qbgmzj6mdytvvge7km

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kg2lub54qbgmzj6mdytvvge7km

30 July 2022

https://api.fatcat.wiki/v0/release/kg2lub54qbgmzj6mdytvvge7km

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/kg2lub54qbgmzj6mdytvvge7km

1 reference

30 July 2022