(Q35062902)

6 August 2017

title

Rethinking Mass Spectrometry-Based Small Molecule Identification Strategies in Metabolomics (English)

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6 August 2017

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Fumio Matsuda

1

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6 August 2017

publication date

16 August 2014

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Mass spectrometry. vol. 2 (2013)

6 August 2017

published in

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6 August 2017

volume

3

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6 August 2017

issue

Spec Iss 2

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6 August 2017

page(s)

S0038

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Genetic analysis of the metabolome exemplified using a rice population

6 August 2017

cites work

1 reference

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Mass spectra-based framework for automated structural elucidation of metabolome data to explore phytochemical diversity

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches

8 July 2018

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X-Rank: a robust algorithm for small molecule identification using tandem mass spectrometry

8 July 2018

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How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry

8 July 2018

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False discovery rates and related statistical concepts in mass spectrometry-based proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

HMDB: the Human Metabolome Database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Basic local alignment search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Method for assessing the statistical significance of mass spectral similarities using basic local alignment search tool statistics

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Basic analytical systems for lipidomics by mass spectrometry in Japan.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

Consensus Structure Elucidation Combining GC/EI-MS, Structure Generation, and Calculated Properties

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4321339

9 December 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/26819881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.5702/MASSSPECTROMETRY.S0038

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6 August 2017

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6 August 2017

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