(Q35068185)

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A synthetic biology approach for evaluating the functional contribution of designer cellulosome components to deconstruction of cellulosic substrates

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scholarly article

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Europe PubMed Central

PubMed publication ID

6 August 2017

A synthetic biology approach for evaluating the functional contribution of designer cellulosome components to deconstruction of cellulosic substrates (English)

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Europe PubMed Central

PubMed publication ID

6 August 2017

synthetic biology

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inferred from title

Tuval Ben-Yehezkel

6

object named as

Tuval Ben-Yehezkel

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8

object named as

Ehud Shapiro

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Europe PubMed Central

PubMed publication ID

6 August 2017

author name string

Yael Vazana

1

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Yoav Barak

2

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Europe PubMed Central

PubMed publication ID

6 August 2017

Tamar Unger

3

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Yoav Peleg

4

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Melina Shamshoum

5

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Tuval Ben-Yehezkel

6

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Yair Mazor

7

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Raphael Lamed

9

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Edward A Bayer

10

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6 August 2017

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publication date

16 December 2013

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Europe PubMed Central

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6 August 2017

Biotechnology for Biofuels

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Europe PubMed Central

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6 August 2017

6

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Europe PubMed Central

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6 August 2017

1

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Europe PubMed Central

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6 August 2017

182

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Improving activity of minicellulosomes by integration of intra- and intermolecular synergies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Assembly of xylanases into designer cellulosomes promotes efficient hydrolysis of the xylan component of a natural recalcitrant cellulosic substrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Processing DNA molecules as text

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Cellulase-xylanase synergy in designer cellulosomes for enhanced degradation of a complex cellulosic substrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Modeling the self-assembly of the cellulosome enzyme complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Contribution of a xylan-binding module to the degradation of a complex cellulosic substrate by designer cellulosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Modular arrangement of a cellulosomal scaffoldin subunit revealed from the crystal structure of a cohesin dyad

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Intermodular linker flexibility revealed from crystal structures of adjacent cellulosomal cohesins of Acetivibrio cellulolyticus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Recursive construction of perfect DNA molecules from imperfect oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

The Clostridium cellulolyticum dockerin displays a dual binding mode for its cohesin partner

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Incorporation of fungal cellulases in bacterial minicellulosomes yields viable, synergistically acting cellulolytic complexes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Evidence for a dual binding mode of dockerin modules to cohesins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Macromolecular Organization of the Cellulolytic Enzyme Complex of Clostridium thermocellum as Revealed by Electron Microscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Properties of a Clostridium thermocellum Endoglucanase Produced in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Saccharification of Complex Cellulosic Substrates by the Cellulase System from Clostridium thermocellum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Functional subgenomics of Clostridium thermocellum cellulosomal genes: identification of the major catalytic components in the extracellular complex and detection of three new enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Carbohydrate-binding modules: fine-tuning polysaccharide recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

ScaC, an adaptor protein carrying a novel cohesin that expands the dockerin-binding repertoire of the Ruminococcus flavefaciens 17 cellulosome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Architecture of the Bacteroides cellulosolvens cellulosome: description of a cell surface-anchoring scaffoldin and a family 48 cellulase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

The cellulosome system of Acetivibrio cellulolyticus includes a novel type of adaptor protein and a cell surface anchoring protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Regulation of the Cellulosomal celS ( cel48A ) Gene of Clostridium thermocellum Is Growth Rate Dependent

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Novel organization and divergent dockerin specificities in the cellulosome system of Ruminococcus flavefaciens.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Degradation of cellulose substrates by cellulosome chimeras. Substrate targeting versus proximity of enzyme components

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Design and production of active cellulosome chimeras. Selective incorporation of dockerin-containing enzymes into defined functional complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Properties and mutation analysis of the CelK cellulose-binding domain from the Clostridium thermocellum cellulosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Solution structure of the module X2 1 of unknown function of the cellulosomal scaffolding protein CipC of Clostridium cellulolyticum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

A large gene cluster for the Clostridium cellulovorans cellulosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

A scaffoldin of the Bacteroides cellulosolvens cellulosome that contains 11 type II cohesins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

A novel cellulosomal scaffoldin from Acetivibrio cellulolyticus that contains a family 9 glycosyl hydrolase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Cloning and sequence analysis of a new cellulase gene encoding CelK, a major cellulosome component of Clostridium thermocellum: evidence for gene duplication and recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

The crystal structure of a type I cohesin domain at 1.7 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

The cellulolytic system of Clostridium cellulolyticum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Characterization of the cellulolytic complex (cellulosome) produced by Clostridium cellulolyticum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Interactions of the CelS binding ligand with various receptor domains of the Clostridium thermocellum cellulosomal scaffolding protein, CipA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Organization of a Clostridium thermocellum gene cluster encoding the cellulosomal scaffolding protein CipA and a protein possibly involved in attachment of the cellulosome to the cell surface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

The cellulosome--a treasure-trove for biotechnology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Expression, purification, and characterization of the cellulose-binding domain of the scaffoldin subunit from the cellulosome of Clostridium thermocellum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Characterization of a cellulose-binding, cellulase-containing complex in Clostridium thermocellum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Sequence of a cellulase gene of the thermophilic bacterium Clostridium thermocellum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

Isolation and properties of a major cellobiohydrolase from the cellulosome of Clostridium thermocellum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

8 July 2018

How does plant cell wall nanoscale architecture correlate with enzymatic digestibility?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Designer cellulosomes for enhanced hydrolysis of cellulosic substrates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Thermobifida fusca exoglucanase Cel6B is incompatible with the cellulosomal mode in contrast to endoglucanase Cel6A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Molecular architecture and structural transitions of a Clostridium thermocellum mini-cellulosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Synergy, structure and conformational flexibility of hybrid cellulosomes displaying various inter-cohesins linkers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Analysis of a Clostridium josui cellulase gene cluster containing the man5A gene and characterization of recombinant Man5A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Applications of the Restriction Free (RF) cloning procedure for molecular manipulations and protein expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Conversion of Thermobifida fusca free exoglucanases into cellulosomal components: comparative impact on cellulose-degrading activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Global view of the Clostridium thermocellum cellulosome revealed by quantitative proteomic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Action of designer cellulosomes on homogeneous versus complex substrates: controlled incorporation of three distinct enzymes into a defined trifunctional scaffoldin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Crystallization and preliminary X-ray analysis of a cohesin domain of the cellulosome from Clostridium thermocellum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3878649

27 September 2018

Small-angle X-ray scattering and crystallography: a winning combination for exploring the multimodular organization of cellulolytic macromolecular complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the cellulolytic complex (cellulosome) of Clostridium acetobutylicum

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural basis of cellulosome efficiency explored by small angle X-ray scattering

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the cellulolytic complex (cellulosome) from Ruminococcus albus

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural insights into the mechanism of formation of cellulosomes probed by small angle X-ray scattering

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhanced cellulose degradation by nano-complexed enzymes: Synergism between a scaffold-linked exoglucanase and a free endoglucanase

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Species-specificity of the cohesin-dockerin interaction between Clostridium thermocellum and Clostridium cellulolyticum: prediction of specificity determinants of the dockerin domain

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cellulase and hemicellulase genes of Clostridium thermocellum from five independent collections contain few overlaps and are widely scattered across the chromosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression, purification and subunit-binding properties of cohesins 2 and 3 of the Clostridium thermocellum cellulosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Matching fusion protein systems for affinity analysis of two interacting families of proteins: the cohesin-dockerin interaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/24341331

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1754-6834-6-182

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

ResearchGate publication ID

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