(Q35069964)

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Four genotyping schemes for phylogenetic analysis of Pseudomonas aeruginosa: comparison of their congruence with multi-locus sequence typing

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Europe PubMed Central

PubMed publication ID

6 August 2017

Four genotyping schemes for phylogenetic analysis of Pseudomonas aeruginosa: comparison of their congruence with multi-locus sequence typing (English)

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Europe PubMed Central

PubMed publication ID

6 August 2017

Pseudomonas aeruginosa

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Christine Pourcel

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Christine Pourcel

6

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Christian Giske

8

object named as

Christian G Giske

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Europe PubMed Central

PubMed publication ID

6 August 2017

author name string

Makaoui Maâtallah

1

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Europe PubMed Central

PubMed publication ID

6 August 2017

Amina Bakhrouf

2

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Europe PubMed Central

PubMed publication ID

6 August 2017

Muhammed Asif Habeeb

3

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Agata Turlej-Rogacka

4

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Europe PubMed Central

PubMed publication ID

6 August 2017

Aina Iversen

5

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Europe PubMed Central

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6 August 2017

Olfa Sioud

7

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Europe PubMed Central

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6 August 2017

language of work or name

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publication date

11 December 2013

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Europe PubMed Central

PubMed publication ID

6 August 2017

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Europe PubMed Central

PubMed publication ID

6 August 2017

8

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Europe PubMed Central

PubMed publication ID

6 August 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

e82069

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Europe PubMed Central

PubMed publication ID

6 August 2017

copyright license

Creative Commons Attribution 4.0 International

11 December 2013

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April 2022 Public Data File from Crossref

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1 reference

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Pseudomonas aeruginosa outbreak linked to mineral water bottles in a neonatal intensive care unit: fast typing by use of high-resolution melting analysis of a variable-number tandem-repeat locus.

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Genome-wide single nucleotide polymorphism typing method for identification of Bacillus anthracis species and strains among B. cereus group species

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Multilocus sequence types of carbapenem-resistant Pseudomonas aeruginosa in Singapore carrying metallo-beta-lactamase genes, including the novel bla(IMP-26) gene

1 reference

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Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics

1 reference

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Evolution of MRSA during hospital transmission and intercontinental spread

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Multilocus variable-number tandem repeat analysis for molecular typing and phylogenetic analysis of Shigella flexneri

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Multilocus variable-number tandem repeat analysis as a molecular tool for subtyping and phylogenetic analysis of bacterial pathogens

1 reference

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Pseudomonas aeruginosa population structure revisited

1 reference

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Molecular epidemiology of metallo-beta-lactamase-producing Pseudomonas aeruginosa isolates from Norway and Sweden shows import of international clones and local clonal expansion

1 reference

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Nosocomial spread of colistin-only-sensitive sequence type 235 Pseudomonas aeruginosa isolates producing the extended-spectrum beta-lactamases GES-1 and GES-5 in Spain

1 reference

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Evaluation of a nine-locus variable-number tandem-repeat scheme for typing of Pseudomonas aeruginosa

1 reference

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Phylogenetic understanding of clonal populations in an era of whole genome sequencing

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Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens

1 reference

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Microbial diversity and the genetic nature of microbial species

1 reference

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Multilocus sequence typing compared to pulsed-field gel electrophoresis for molecular typing of Pseudomonas aeruginosa

1 reference

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Multiple-locus variable-number tandem-repeat analysis for longitudinal survey of sources of Pseudomonas aeruginosa infection in cystic fibrosis patients.

1 reference

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1 reference

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Global genetic population structure of Bacillus anthracis

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Population structure of Pseudomonas aeruginosa

1 reference

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Establishing clonal relationships between VIM-1-like metallo-beta-lactamase-producing Pseudomonas aeruginosa strains from four European countries by multilocus sequence typing.

1 reference

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Choosing an appropriate bacterial typing technique for epidemiologic studies.

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1 reference

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Ecology of Pseudomonas aeruginosa in the intensive care unit and the evolving role of water outlets as a reservoir of the organism

1 reference

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Genome diversity of Pseudomonas aeruginosa isolates from cystic fibrosis patients and the hospital environment

1 reference

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Development of a multilocus sequence typing scheme for the opportunistic pathogen Pseudomonas aeruginosa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859543

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National surveillance of antimicrobial resistance in Pseudomonas aeruginosa isolates obtained from intensive care unit patients from 1993 to 2002.

1 reference

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Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales

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Analyses of clonality and the evolution of bacterial pathogens

1 reference

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spa typing method for discriminating among Staphylococcus aureus isolates: implications for use of a single marker to detect genetic micro- and macrovariation

1 reference

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Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource

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Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859543

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Genomic typing of Pseudomonas aeruginosa isolates by comparison of Riboprinting and PFGE: correlation of experimental results with those predicted from the complete genome sequence of isolate PAO1

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1 reference

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Application of different genotyping methods for Pseudomonas aeruginosa in a setting of endemicity in an intensive care unit

1 reference

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How to select and interpret molecular strain typing methods for epidemiological studies of bacterial infections: a review for healthcare epidemiologists. Molecular Typing Working Group of the Society for Healthcare Epidemiology of America

1 reference

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Random amplified polymorphic DNA typing of Pseudomonas aeruginosa isolates recovered from patients with cystic fibrosis

1 reference

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Ribotyping of Pseudomonas aeruginosa: discriminatory power and usefulness as a tool for epidemiological studies.

1 reference

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A major Pseudomonas aeruginosa clone common to patients and aquatic habitats

1 reference

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Detection of Pseudomonas aeruginosa from clinical and environmental samples by amplification of the exotoxin A gene using PCR.

1 reference

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Genetic heterogeneity of Pseudomonas aeruginosa clinical isolates revealed by esterase electrophoretic polymorphism and restriction fragment length polymorphism of the ribosomal RNA gene region.

1 reference

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Discriminatory power of three DNA-based typing techniques for Pseudomonas aeruginosa.

1 reference

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1 reference

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AFLP: a new technique for DNA fingerprinting

1 reference

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Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing

1 reference

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Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity

1 reference

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Restriction enzyme and Southern hybridization analyses of Pseudomonas aeruginosa strains from patients with cystic fibrosis

1 reference

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Isolation of Pseudomonas aeruginosa from open ocean and comparison with freshwater, clinical, and animal isolates

1 reference

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21 January 2018

Environmental contamination with an epidemic strain of Pseudomonas aeruginosa in a Liverpool cystic fibrosis centre, and study of its survival on dry surfaces

1 reference

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21 January 2018

Rapid genotyping of Pseudomonas aeruginosa isolates harboured by adult and paediatric patients with cystic fibrosis using repetitive-element-based PCR assays.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0082069

21 January 2018

Reliability of Pseudomonas aeruginosa semi-automated rep-PCR genotyping in various epidemiological situations.

1 reference

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21 January 2018

Worldwide distribution of Pseudomonas aeruginosa clone C strains in the aquatic environment and cystic fibrosis patients

1 reference

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21 January 2018

Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0082069

21 January 2018

Evolution of pathogenicity in the Bacillus cereus group

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0082069

21 January 2018

First organisms with acquired metallo-beta-lactamases (IMP-13, IMP-22, and VIM-2) reported in Austria

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0082069

21 January 2018

Metallo-beta-lactamase-producing Pseudomonas putida as a reservoir of multidrug resistance elements that can be transferred to successful Pseudomonas aeruginosa clones

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0082069

21 January 2018

Characterisation of the first VIM metallo-beta-lactamase-producing Pseudomonas aeruginosa clinical isolate in Serbia

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0082069

21 January 2018

Molecular typing indicates an important role for two international clonal complexes in dissemination of VIM-producing Pseudomonas aeruginosa clinical isolates in Hungary.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0082069

21 January 2018

Increased prevalence and clonal dissemination of multidrug-resistant Pseudomonas aeruginosa with the blaIMP-1 gene cassette in Hiroshima

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0082069

21 January 2018

High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0082069

21 January 2018

Successful application of the DiversiLab repetitive-sequence-based PCR typing system for confirmation of the circulation of a multiresistant Pseudomonas aeruginosa clone in different hospital wards

1 reference

https://pubmed.ncbi.nlm.nih.gov/24349186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic analysis as a tool in molecular epidemiology of infectious diseases

1 reference

https://pubmed.ncbi.nlm.nih.gov/24349186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SPM-1-Producing Pseudomonas aeruginosa: Analysis of the Ancestor Relationship Using Multilocus Sequence Typing, Pulsed-Field Gel Electrophoresis, and Automated Ribotyping

1 reference

https://pubmed.ncbi.nlm.nih.gov/24349186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0082069

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

2013PLoSO...882069M

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

ResearchGate publication ID

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