(Q35076980)

English

Genome-wide analysis of the 5' and 3' ends of vaccinia virus early mRNAs delineates regulatory sequences of annotated and anomalous transcripts

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scholarly article

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Europe PubMed Central

PubMed publication ID

6 August 2017

Genome-wide analysis of the 5' and 3' ends of vaccinia virus early mRNAs delineates regulatory sequences of annotated and anomalous transcripts (English)

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

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object named as

vaccinia virus

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based on heuristic

inferred from title

5

object named as

Bernard Moss

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Europe PubMed Central

PubMed publication ID

6 August 2017

author name string

Zhilong Yang

1

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Europe PubMed Central

PubMed publication ID

6 August 2017

Daniel P Bruno

2

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Europe PubMed Central

PubMed publication ID

6 August 2017

Craig A Martens

3

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Europe PubMed Central

PubMed publication ID

6 August 2017

Stephen F Porcella

4

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Europe PubMed Central

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6 August 2017

language of work or name

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publication date

13 April 2011

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Europe PubMed Central

PubMed publication ID

6 August 2017

Journal of Virology

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Europe PubMed Central

PubMed publication ID

6 August 2017

85

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Europe PubMed Central

PubMed publication ID

6 August 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

5897-5909

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Genome-wide analysis of promoter architecture in Drosophila melanogaster.

1 reference

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Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome

1 reference

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Simultaneous high-resolution analysis of vaccinia virus and host cell transcriptomes by deep RNA sequencing

1 reference

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Interaction of the vaccinia virus RNA polymerase-associated 94-kilodalton protein with the early transcription factor

1 reference

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Identification of a cytoplasmic complex that adds a cap onto 5'-monophosphate RNA

1 reference

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Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

1 reference

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High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

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Comparative analysis of viral gene expression programs during poxvirus infection: a transcriptional map of the vaccinia and monkeypox genomes

1 reference

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Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes

1 reference

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Genome-wide transcription and the implications for genomic organization

1 reference

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Genome-wide analysis of mammalian promoter architecture and evolution

1 reference

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5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation

1 reference

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Post-transcription cleavage generates the 3' end of F17R transcripts in vaccinia virus

1 reference

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Patterns of variant polyadenylation signal usage in human genes

1 reference

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Identification of a transcription factor, encoded by two vaccinia virus early genes, that regulates the intermediate stage of viral gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3126295

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A 43-nucleotide RNA cis-acting element governs the site-specific formation of the 3' end of a poxvirus late mRNA

1 reference

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Combining evidence using p-values: application to sequence homology searches

1 reference

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Vaccinia virions lacking the RNA helicase nucleoside triphosphate phosphohydrolase II are defective in early transcription

1 reference

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Vaccinia virus RNA helicase: nucleic acid specificity in duplex unwinding

1 reference

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Characterization and temporal regulation of mRNAs encoded by vaccinia virus intermediate-stage genes

1 reference

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

1 reference

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Arrangement of late RNAs transcribed from a 7.1-kilobase EcoRI vaccinia virus DNA fragment

1 reference

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Extension of the transcriptional and translational map of the left end of the vaccinia virus genome to 21 kilobase pairs.

1 reference

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Two nucleic acid-dependent nucleoside triphosphate phosphohydrolases from vaccinia virus. Nucleotide substrate and polynucleotide cofactor specificities

1 reference

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Purification and characterization of a transcription termination factor from vaccinia virions.

1 reference

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Discontinuous transcription or RNA processing of vaccinia virus late messengers results in a 5' poly(A) leader

1 reference

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Oligonucleotide sequence signaling transcriptional termination of vaccinia virus early genes

1 reference

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Early promoter-binding factor from vaccinia virions

1 reference

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Purification of a factor required for transcription of vaccinia virus early genes

1 reference

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Factor-dependent transcription termination by vaccinia virus RNA polymerase. Evidence that the cis-acting termination signal is in nascent RNA.

1 reference

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Structure of the transcription initiation and termination sequences of seven early genes in the vaccinia virus HindIII D fragment

1 reference

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1 reference

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Bromouridine triphosphate inhibits transcription termination and mRNA release by vaccinia virions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3126295

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Structure of vaccinia virus late promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3126295

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Structure of vaccinia virus early promoters

1 reference

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Role of DNA replication in vaccinia virus gene expression: a naked template is required for transcription of three late trans-activator genes

1 reference

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Identification of the vaccinia virus gene encoding an 18-kilodalton subunit of RNA polymerase and demonstration of a 5' poly(A) leader on its early transcript.

1 reference

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Removal of cryptic poxvirus transcription termination signals from the human immunodeficiency virus type 1 envelope gene enhances expression and immunogenicity of a recombinant vaccinia virus.

1 reference

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1 reference

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Methylated 5'-terminal sequences of vaccinia virus mRNA species made in vivo at early and late times after infection

1 reference

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1 reference

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1 reference

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Methylated nucleotides block 5'-terminus of vaccinia virus messenger RNA.

1 reference

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Purification and properties of the vaccinia virus mRNA processing factor

1 reference

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RNA polymerase-associated protein Rap94 confers promoter specificity for initiating transcription of vaccinia virus early stage genes

1 reference

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Ribonucleic acid synthesis in vaccinia virus. I. The mechanism of synthesis and release of RNA in vaccinia cores

1 reference

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Polyadenylate Polymerase from Vaccinia Virions

1 reference

https://pubmed.ncbi.nlm.nih.gov/21490097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An ATPase component of the transcription elongation complex is required for factor-dependent transcription termination by vaccinia RNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/21490097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purification and characterization of a DNA-dependent RNA polymerase from vaccinia virions

1 reference

https://pubmed.ncbi.nlm.nih.gov/21490097

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JVI.00428-11

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

ResearchGate publication ID

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