(Q35086392)

6 August 2017

title

A genome-wide view of mutation rate co-variation using multivariate analyses (English)

1 reference

6 August 2017

main subject

multivariate statistics

1 reference

inferred from title

author

Francesca Chiaromonte

series ordinal

2

object named as

Francesca Chiaromonte

1 reference

6 August 2017

Guruprasad Ananda

1

1 reference

6 August 2017

Kateryna D Makova

series ordinal

3

1 reference

6 August 2017

publication date

22 March 2011

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6 August 2017

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6 August 2017

volume

12

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6 August 2017

issue

3

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6 August 2017

page(s)

R27

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2011-12-3-r27

6 August 2017

exact match

0 references

cites work

What Is a Microsatellite: A Computational and Experimental Definition Based upon Repeat Mutational Behavior at A/T and GT/AC Repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

The (r)evolution of SINE versus LINE distributions in primate genomes: sex chromosomes are important

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Heterozygosity and mutation rate: evidence for an interaction and its implications: the potential for meiotic gene conversions to influence both mutation rate and distribution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Human DNA methylomes at base resolution show widespread epigenomic differences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Biased gene conversion and the evolution of mammalian genomic landscapes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Mapping insertions, deletions and SNPs on Venter's chromosomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Human mutation rate associated with DNA replication timing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Heterozygosity increases microsatellite mutation rate, linking it to demographic history

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

The impact of recombination on nucleotide substitutions in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Human-macaque comparisons illuminate variation in neutral substitution rates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Using galaxy to perform large-scale interactive data analyses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

The UCSC Genome Browser Database: 2008 update

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

The genome-wide determinants of human and chimpanzee microsatellite evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Biased distributions and decay of long interspersed nuclear elements in the chicken genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

A macaque's-eye view of human insertions and deletions: differences in mechanisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Elevated rates of sister chromatid exchange at chromosome ends

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Genome-wide identification of human functional DNA using a neutral indel model

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

A fine-scale map of recombination rates and hotspots across the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Repeat instability: mechanisms of dynamic mutations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Initial sequence of the chimpanzee genome and comparison with the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

The scale of mutational variation in the murid genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

The DNA sequence of the human X chromosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Microsatellites: simple sequences with complex evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Insertions and deletions are male biased too: a whole-genome analysis in rodents

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Comparative recombination rates in the rat, mouse, and human genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Duplication, coclustering, and selection of human Alu retrotransposons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Replication timing of the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Initial sequencing and comparative analysis of the mouse genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

8 July 2018

Male-driven evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

SINEs and LINEs: the art of biting the hand that feeds you.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

A high-resolution recombination map of the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

The human genome browser at UCSC

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Strong male-driven evolution of DNA sequences in humans and apes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Association between divergence and interspersed repeats in mammalian noncoding genomic DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

"Bar-coding" primate chromosomes: molecular cytogenetic screening for the ancestral hominoid karyotype

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

dbSNP: the NCBI database of genetic variation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Stabilizing effects of interruptions on trinucleotide repeat expansions in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Cytosine methylation and mammalian development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Efficient repair of all types of single-base mismatches in recombination intermediates in Chinese hamster ovary cells. Competition between long-patch and G-T glycosylase-mediated repair of G-T mismatches

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Correlation of GC content with replication timing and repair mechanisms in weakly expressed E.coli genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

8 July 2018

CpG islands and genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

CpG islands in vertebrate genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Correlation between molecular clock ticking, codon usage fidelity of DNA repair, chromosome banding and chromatin compactness in germline cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Heterogeneous DNA damage and repair in the mammalian genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Different base/base mispairs are corrected with different efficiencies and specificities in monkey kidney cells.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Evolutionary consequences of nonrandom damage and repair of chromatin domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Why do human diversity levels vary at a megabase scale?

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

Strong regional biases in nucleotide substitution in the chicken genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

Characteristics, causes and evolutionary consequences of male-biased mutation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

High-throughput mapping of the chromatin structure of human promoters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

Gene expression, synteny, and local similarity in human noncoding mutation rates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

Even small SNP clusters are non-randomly distributed: is this evidence of mutational non-independence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

How strong is the mutagenicity of recombination in mammals?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

The relationship between microsatellite slippage mutation rate and the number of repeat units

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds

27 September 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-3-R27

Comparison of human genetic and sequence-based physical maps

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129677

Mapping DNase-I hypersensitive sites on human isochores

16 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21426544

12 December 2020

inferred from PubMed ID database lookup

Insertions, substitutions, and the origin of microsatellites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21426544

12 December 2020

inferred from PubMed ID database lookup

Selection against deleterious LINE-1-containing loci in the human lineage

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21426544

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/GB-2011-12-3-R27

1 reference

Dimensions Publication ID

6 August 2017

0 references

1 reference

6 August 2017

1 reference