(Q35089087)

6 August 2017

title

Engineered ribosomal RNA operon copy-number variants of E. coli reveal the evolutionary trade-offs shaping rRNA operon number (English)

1 reference

6 August 2017

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Zsuzsanna Gyorfy

1

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6 August 2017

Gabor Draskovits

2

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6 August 2017

Viktor Vernyik

3

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6 August 2017

Frederick F Blattner

4

1 reference

6 August 2017

Tamas Gaal

5

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6 August 2017

Gyorgy Posfai

6

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6 August 2017

language of work or name

English

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publication date

23 January 2015

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6 August 2017

published in

Nucleic Acids Research

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6 August 2017

volume

43

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6 August 2017

issue

3

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6 August 2017

page(s)

1783-1794

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Creative Commons Attribution 4.0 International

6 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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8 July 2018

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8 July 2018

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A coarse-grained biophysical model of E. coli and its application to perturbation of the rRNA operon copy number

8 July 2018

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Active transcription of rRNA operons is a driving force for the distribution of RNA polymerase in bacteria: effect of extrachromosomal copies of rrnB on the in vivo localization of RNA polymerase

8 July 2018

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rRNA transcription in Escherichia coli

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Life history implications of rRNA gene copy number in Escherichia coli

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli

8 July 2018

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rRNA operon copy number reflects ecological strategies of bacteria

8 July 2018

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Increased rrn gene dosage causes intermittent transcription of rRNA in Escherichia coli

8 July 2018

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Construction and initial characterization of Escherichia coli strains with few or no intact chromosomal rRNA operons.

8 July 2018

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5S rRNA gene deletions cause an unexpectedly high fitness loss in Escherichia coli

8 July 2018

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A small, dilute-cytoplasm, high-affinity, novel bacterium isolated by extinction culture and having kinetic constants compatible with growth at ambient concentrations of dissolved nutrients in seawater

8 July 2018

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Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256.

8 July 2018

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The complete genome sequence of Escherichia coli K-12

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Versatile insertion plasmids for targeted genome manipulations in bacteria: isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Linearization of the Bradford protein assay increases its sensitivity: theoretical and experimental studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Depletion of functional ribosomal RNA operons in Escherichia coli causes increased expression of the remaining intact copies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

rRNA operon multiplicity in Escherichia coli and the physiological implications of rrn inactivation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Feedback regulation of ribosomal protein gene expression in Escherichia coli: structural homology of ribosomal RNA and ribosomal protein MRNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Chromosomal locations of the genes for rRNA in Escherichia coli K-12

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

When polymerases collide: replication and the transcriptional organization of the E. coli chromosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Guanosine 3'-diphosphate 5'-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Organization of the bacterial chromosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Quantifying fitness and gene stability in microorganisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Control of rRNA synthesis in Escherichia coli at increased rrn gene dosage. Role of guanosine tetraphosphate and ribosome feedback

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

The number of rRNA genes in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Multidimensional optimality of microbial metabolism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

The distribution of RNA polymerase in Escherichia coli is dynamic and sensitive to environmental cues.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Growth-rate-dependent regulation of ribosome synthesis in E. coli: expression of the lacZ and galK genes fused to ribosomal promoters

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330394

Expression of rRNA and tRNA genes in Escherichia coli: evidence for feedback regulation by products of rRNA operons

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25618851

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DNA determinants of rRNA synthesis in E. coli: growth rate dependent regulation, feedback inhibition, upstream activation, antitermination

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25618851

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKV040

1 reference

6 August 2017

1 reference

6 August 2017

1 reference