(Q35092513)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

title

Comparative genome analysis and identification of competitive and cooperative interactions in a polymicrobial disease (English)

1 reference

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15 February 2020

2

1 reference

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15 February 2020

Fumito Maruyama

7

1 reference

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15 February 2020

author name string

Akiko Endo

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Nachiko Ogata

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Takashi Nozawa

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Chihiro Aikawa

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Shinichi Arakawa

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Yuichi Izumi

8

1 reference

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15 February 2020

Ichiro Nakagawa

9

1 reference

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15 February 2020

publication date

29 August 2014

1 reference

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15 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

volume

9

1 reference

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15 February 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

page(s)

629-642

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported

15 February 2020

copyright license

start time

29 August 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

CRISPR-Cas systems: beyond adaptive immunity

1 reference

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Porphyromonas gingivalis and Treponema denticola exhibit metabolic symbioses

8 July 2018

1 reference

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Identification and characterization of prokaryotic dipeptidyl-peptidase 5 from Porphyromonas gingivalis

8 July 2018

1 reference

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Understanding the interactions between bacteria in the human gut through metabolic modeling

8 July 2018

1 reference

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Structural basis of the novel S. pneumoniae virulence factor, GHIP, a glycosyl hydrolase 25 participating in host-cell invasion

8 July 2018

1 reference

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Oral microbiome of deep and shallow dental pockets in chronic periodontitis

8 July 2018

1 reference

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Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis

8 July 2018

1 reference

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CRISPR regulation of intraspecies diversification by limiting IS transposition and intercellular recombination.

8 July 2018

1 reference

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Pan-genome and comparative genome analyses of propionibacterium acnes reveal its genomic diversity in the healthy and diseased human skin microbiome

8 July 2018

1 reference

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CRISPR-mediated adaptive immune systems in bacteria and archaea

8 July 2018

1 reference

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The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains

8 July 2018

1 reference

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Genome-wide detection of spontaneous chromosomal rearrangements in bacteria

8 July 2018

1 reference

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The dynamics of cooperative bacterial virulence in the field.

8 July 2018

1 reference

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Subgingival biodiversity in subjects with uncontrolled type-2 diabetes and chronic periodontitis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Porphyromonas gingivalis: an invasive and evasive opportunistic oral pathogen

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Natural competence is a major mechanism for horizontal DNA transfer in the oral pathogen Porphyromonas gingivalis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

PGAP: pan-genomes analysis pipeline

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

The effect of a cell-to-cell communication molecule, Pseudomonas quinolone signal (PQS), produced by P. aeruginosa on other bacterial species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Evolution and classification of the CRISPR-Cas systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

iPath2.0: interactive pathway explorer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Protein uptake by bacteria: An endocytosis-like process in the planctomycete Gemmata obscuriglobus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

CDD: a Conserved Domain Database for the functional annotation of proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Selective sorting of cargo proteins into bacterial membrane vesicles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Proteases of Porphyromonas gingivalis as Important Virulence Factors in Periodontal Disease and Potential Targets for Plant-Derived Compounds: A Review Article

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Virulence factors of the oral spirochete Treponema denticola

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Virulence factors of Treponema denticola

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Virulence mechanisms of Tannerella forsythia

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Self-targeting by CRISPR: gene regulation or autoimmunity?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Periodontitis: a polymicrobial disruption of host homeostasis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Comparative genomics: the bacterial pan-genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Bacterial protection of beetle-fungus mutualism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

The RAST Server: rapid annotations using subsystems technology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Identification of a signalling molecule involved in bacterial intergeneric communication

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

The burden of genetic load

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

KAAS: an automatic genome annotation and pathway reconstruction server

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Rat model of polymicrobial infection, immunity, and alveolar bone resorption in periodontal disease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

MvirDB--a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Diffusion model of intergroup selection, with special reference to evolution of an altruistic character

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Biofilm formation by the periodontopathic bacteria Treponema denticola and Porphyromonas gingivalis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Application of phylogenetic networks in evolutionary studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Porphyromonas gingivalis, Treponema denticola, and Tannerella forsythia: the "red complex", a prototype polybacterial pathogenic consortium in periodontitis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Diversity of the human intestinal microbial flora

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Competitive interactions in mixed-species biofilms containing the marine bacterium Pseudoalteromonas tunicata.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Human polymicrobial infections

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Staphylococcus aureus serves as an iron source for Pseudomonas aeruginosa during in vivo coculture

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Environmental genome shotgun sequencing of the Sargasso Sea

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

METABOLISM OF MICROORGANISMS AS RELATED TO THEIR PATHOGENICITY.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

New Bacterial Species Associated with Chronic Periodontitis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Epidemiology of periodontal disease: a review and clinical perspectives

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Development of a gene inactivation system for Bacteroides forsythus: construction and characterization of a BspA mutant

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Bacterial diversity in human subgingival plaque

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Respiratory viral infection predisposing for bacterial disease: a concise review

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Virulence factors of Porphyromonas gingivalis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Current and future approaches for diagnosis of periodontal diseases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Microbial complexes in subgingival plaque

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

PAML: a program package for phylogenetic analysis by maximum likelihood

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Variation in synonymous substitution rates among mammalian genes and the correlation between synonymous and nonsynonymous divergences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Competitive metabolism of naphthalene, methylnaphthalenes, and fluorene by phenanthrene-degrading pseudomonads

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Survival strategies of bacteria in the natural environment.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Nutritional interactions between two suspected periodontopathogens, Treponema denticola and Porphyromonas gingivalis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Rapid diagnosis of anaerobic infections by gas-liquid chromatography

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Inter-bacterial correlations in subgingival biofilms: a large-scale survey

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Characterization of the Porphyromonas gingivalis conjugative transposon CTnPg1: determination of the integration site and the genes essential for conjugal transfer.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Butyric acid induces apoptosis via oxidative stress in Jurkat T-cells

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

An environmental perspective on large-scale genome clustering based on metabolic capabilities

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Effect of pH on metabolic pathway shift in fermentation of xylose by Clostridium tyrobutyricum

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331577

Composition and buffer capacity of pooled starved plaque fluid from caries-free and caries-susceptible individuals

27 September 2018

1 reference

12 December 2020

Gas-liquid chromatography of the gingival fluid as an aid in periodontal diagnosis

1 reference

12 December 2020

Loss of adherence ability to human gingival epithelial cells in S-layer protein-deficient mutants of Tannerella forsythensis

1 reference

12 December 2020

Demonstration of a bimodal coaggregation reaction between Porphyromonas gingivalis and Treponema denticola

1 reference

12 December 2020

The effect of supragingival plaque control on the subgingival microflora in human periodontitis

1 reference

12 December 2020

Volatile fatty acids, metabolic by-products of periodontopathic bacteria, inhibit lymphocyte proliferation and cytokine production

1 reference

12 December 2020

Short-chain carboxylic acid concentration in human gingival crevicular fluid

1 reference

12 December 2020

Oxidative stress response in the opportunistic oral pathogen Fusobacterium nucleatum

1 reference

12 December 2020

Genetic analysis of Treponema denticola ATCC 35405 biofilm formation

1 reference

12 December 2020

Evaluation of the effects of short-chain fatty acids and extracellular pH on bovine neutrophil function in vitro

1 reference

12 December 2020

Pathways of glutamate catabolism among Fusobacterium species

1 reference

12 December 2020

Identifiers

DOI

10.1038/ISMEJ.2014.155

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

PubMed publication ID

25171331

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25171331%20AND%20SRC:MED&resulttype=core&format=json