(Q35097948)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

title

Modified ribosome profiling reveals high abundance of ribosome protected mRNA fragments derived from 3' untranslated regions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Mikael Björklund

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

author name string

Teemu P Miettinen

series ordinal

1

1 reference

PubMed publication ID

25550424

6 August 2017

Mikael Björklund

series ordinal

2

1 reference

PubMed publication ID

25550424

6 August 2017

language of work or name

English

0 references

publication date

29 December 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

volume

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

page(s)

1019-1034

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

26 February 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Translation inhibitors cause abnormalities in ribosome profiling experiments

9 July 2018

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A draft map of the human proteome

9 July 2018

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Identification of transcriptional and metabolic programs related to mammalian cell size

9 July 2018

1 reference

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Dom34 rescues ribosomes in 3' untranslated regions

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster

9 July 2018

1 reference

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A compendium of RNA-binding motifs for decoding gene regulation.

9 July 2018

1 reference

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Reinitiation and other unconventional posttermination events during eukaryotic translation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

9 July 2018

1 reference

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A versatile platform for creating a comprehensive UAS-ORFeome library in Drosophila

9 July 2018

1 reference

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Structures of the human and Drosophila 80S ribosome

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Peptidomic discovery of short open reading frame-encoded peptides in human cells.

9 July 2018

1 reference

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Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells

9 July 2018

1 reference

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The mechanism of eukaryotic translation initiation: new insights and challenges

9 July 2018

1 reference

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The elongation, termination, and recycling phases of translation in eukaryotes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

9 July 2018

1 reference

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Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Termination and post-termination events in eukaryotic translation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Primary role for endoplasmic reticulum-bound ribosomes in cellular translation identified by ribosome profiling

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Counting absolute numbers of molecules using unique molecular identifiers

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

The quantitative proteome of a human cell line.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

The ribosome uses two active mechanisms to unwind messenger RNA during translation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

A method for counting PCR template molecules with application to next-generation sequencing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Identification of differential translation in genome wide studies

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

RBPDB: a database of RNA-binding specificities

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Mammalian microRNAs predominantly act to decrease target mRNA levels

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Visualization of codon-dependent conformational rearrangements during translation termination

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

MEME SUITE: tools for motif discovery and searching

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Nonsense-mediated mRNA decay (NMD) mechanisms

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Identification and characterization of extensive intra-molecular associations between 3'-UTRs and their ORFs

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

The microRNA.org resource: targets and expression

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Evidence for reassociation of RNA-binding proteins after cell lysis: implications for the interpretation of immunoprecipitation analyses

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Association of Ribonuclease I with Ribosomes and Their Subunits

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Ribosome pausing and stacking during translation of a eukaryotic mRNA.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Sequence and secondary structure of Drosophila melanogaster 5.8S and 2S rRNAs and of the processing site between them

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

Affinity purification of ribosomes to access the translatome

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4333376

A cytoskeletal structure with associated polyribosomes obtained from HeLa cells

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25550424

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU1310

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

PubMed publication ID

25550424

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25550424%20AND%20SRC:MED&resulttype=core&format=json