(Q35102004)

6 August 2017

title

PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data (English)

1 reference

6 August 2017

2

Trairak Pisitkun

1 reference

6 August 2017

7

Mark A Knepper

1 reference

6 August 2017

Fahad Saeed

1

1 reference

6 August 2017

Jason D Hoffert

3

1 reference

6 August 2017

Sara Rashidian

4

1 reference

6 August 2017

Guanghui Wang

5

1 reference

6 August 2017

Marjan Gucek

6

1 reference

6 August 2017

publication date

7 November 2013

1 reference

6 August 2017

1 reference

6 August 2017

volume

11

1 reference

6 August 2017

issue

Suppl 1

1 reference

6 August 2017

page(s)

S14

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

An Efficient Dynamic Programming Algorithm for Phosphorylation Site Assignment of Large-Scale Mass Spectrometry Data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

An Efficient Algorithm for Clustering of Large-Scale Mass Spectrometry Data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

High Performance Multiple Sequence Alignment System for Pyrosequencing Reads from Multiple Reference Genomes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

CPhos: a program to calculate and visualize evolutionarily conserved functional phosphorylation sites

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Dynamics of the G protein-coupled vasopressin V2 receptor signaling network revealed by quantitative phosphoproteomics.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Evaluation of HCD- and CID-type fragmentation within their respective detection platforms for murine phosphoproteomics.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Modification site localization scoring integrated into a search engine.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Confident phosphorylation site localization using the Mascot Delta Score

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Glycoprotein capture and quantitative phosphoproteomics indicate coordinated regulation of cell migration upon lysophosphatidic acid stimulation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Discovery of phosphorylation motif mixtures in phosphoproteomics data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Phosphorylation-specific MS/MS scoring for rapid and accurate phosphoproteome analysis

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Clustering millions of tandem mass spectra

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Protein identification by spectral networks analysis

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Large-scale characterization of HeLa cell nuclear phosphoproteins

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.

9 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1477-5956-11-S1-S14

Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1477-5956-11-S1-S14

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1477-5956-11-S1-S14

A fast SEQUEST cross correlation algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1477-5956-11-S1-S14

Universal and confident phosphorylation site localization using phosphoRS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1477-5956-11-S1-S14

SLoMo: automated site localization of modifications from ETD/ECD mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1477-5956-11-S1-S14

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1477-5956-11-S1-S14

Evolution of characterized phosphorylation sites in budding yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1477-5956-11-S1-S14

cPLA2 phosphorylation at serine-515 and serine-505 is required for arachidonic acid release in vascular smooth muscle cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1477-5956-11-S1-S14

Tracing cancer networks with phosphoproteomics.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

Unrestrictive identification of post-translational modifications through peptide mass spectrometry

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

HPLC and mass spectrometry of intrinsic membrane proteins

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3909108

10.1186/1477-5956-11-S1-S14

27 September 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

6 August 2017

0 references

1 reference

6 August 2017

1 reference