(Q35103391)

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Neutralizing positive charges at the surface of a protein lowers its rate of amide hydrogen exchange without altering its structure or increasing its thermostability.

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16 January 2020

Neutralizing positive charges at the surface of a protein lowers its rate of amide hydrogen exchange without altering its structure or increasing its thermostability (English)

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16 January 2020

Haribabu Arthanari

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16 January 2020

Michael P. Pollastri

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16 January 2020

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Steven P Gygi

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16 January 2020

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Basar Bilgicer

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16 January 2020

George M. Whitesides

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George M Whitesides

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16 January 2020

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Bryan F Shaw

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16 January 2020

Max Narovlyansky

3

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16 January 2020

Armando Durazo

4

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16 January 2020

Dominique P Frueh

5

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16 January 2020

Andrew Lee

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16 January 2020

Gerhard Wagner

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16 January 2020

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19 November 2010

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16 January 2020

Journal of the American Chemical Society

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16 January 2020

132

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16 January 2020

49

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16 January 2020

17411-17425

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16 January 2020

Hydrogen/deuterium exchange reveals distinct agonist/partial agonist receptor dynamics within vitamin D receptor/retinoid X receptor heterodimer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Conformational dynamics of the bovine mitochondrial ADP/ATP carrier isoform 1 revealed by hydrogen/deuterium exchange coupled to mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Hydrogen exchange mass spectrometry: what is it and what can it tell us?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Targeting Bcr–Abl by combining allosteric with ATP-binding-site inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Backbone conformational dependence of peptide acidity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Pathway for unfolding of ubiquitin in sodium dodecyl sulfate, studied by capillary electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

A billion-fold range in acidity for the solvent-exposed amides of Pyrococcus furiosus rubredoxin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Lysine acetylation can generate highly charged enzymes with increased resistance toward irreversible inactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Probing protein structure and dynamics by hydrogen exchange-mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Strong anion exchange for studying protein-DNA interactions by H/D exchange mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Binding of a single zinc ion to one subunit of copper-zinc superoxide dismutase apoprotein substantially influences the structure and stability of the entire homodimeric protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Hydrogen/deuterium scrambling during quadrupole time-of-flight MS/MS analysis of a zinc-binding protein domain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

cAMP activation of PKA defines an ancient signaling mechanism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Protein folding pathways studied by pulsed- and native-state hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Local unfolding in a destabilized, pathogenic variant of superoxide dismutase 1 observed with H/D exchange and mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Why are proteins charged? Networks of charge-charge interactions in proteins measured by charge ladders and capillary electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Increasing the net charge and decreasing the hydrophobicity of bovine carbonic anhydrase decreases the rate of denaturation with sodium dodecyl sulfate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Destabilization of apoprotein is insufficient to explain Cu,Zn-superoxide dismutase-linked ALS pathogenesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Hydrogen exchange and ligand binding: ligand-dependent and ligand-independent protection in the Src SH3 domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Principles of protein folding, misfolding and aggregation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Reversible stages of the low-pH-triggered conformational change in influenza virus hemagglutinin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Experimental approaches to protein folding based on the concept of a slow hydrogen exchange core

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Protein folding intermediates and pathways studied by hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Restricted motion of the lipoyl-lysine swinging arm in the pyruvate dehydrogenase complex of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Novel disulfide engineering in human carbonic anhydrase II using the PAIRWISE side-chain geometry database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Hydrogen-exchange stabilities of RNase T1 and variants with buried and solvent-exposed Ala --> Gly mutations in the helix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Conformational stability of ribonuclease T1 determined by hydrogen-deuterium exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Salt effects on the amide hydrogen exchange of bovine pancreatic trypsin inhibitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

A statistical mechanical model for hydrogen exchange in globular proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Primary structure effects on peptide group hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Protein folding intermediates: native-state hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

A novel application of nuclear Overhauser enhancement (NOE) in proteins: Analysis of correlated events in the exchange of internal labile protons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Hydrogen Exchange in Proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Primary structure effects on peptide group hydrogen exchange.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Alpha-chymotrypsin: a case study of substituent constants and regression analysis in enzymic structure--activity relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

pH dependence of hydrogen exchange from backbone peptide amides in apamin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Amide proton exchange in proteins by EX1 kinetics: studies of the basic pancreatic trypsin inhibitor at variable p2H and temperature.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Protein structure determination in solution by NMR spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Multidimensional Triple Resonance NMR Spectroscopy of Isotopically Uniformly Enriched Proteins: A Powerful New Strategy for Structure Determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Structural interpretation of the amide proton exchange in the basic pancreatic trypsin inhibitor and related proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Correlation between the amide proton exchange rates and the denaturation temperatures in globular proteins related to the basic pancreatic trypsin inhibitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

9 July 2018

Structure and intermolecular dynamics of aggregates populated during amyloid fibril formation studied by hydrogen/deuterium exchange.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Polarization and polarizability assessed by protein amide acidity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Dynamics of glyphosate-induced conformational changes of Mycobacterium tuberculosis 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) determined by hydrogen-deuterium exchange and electrospray mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Electrostatic stabilization and general base catalysis in the active site of the human protein disulfide isomerase a domain monitored by hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Resonance energy transfer and ligand binding studies on pH-induced folded states of human serum albumin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

GuHCl and NaCl-dependent hydrogen exchange in MerP reveals a well-defined core with an unusual exchange pattern

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Peracetylated bovine carbonic anhydrase (BCA-Ac18) is kinetically more stable than native BCA to sodium dodecyl sulfate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Electrostatic switches that mediate the pH-dependent conformational change of "short" recombinant human pseudocathepsin D.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Eliminating positively charged lysine epsilon-NH3+ groups on the surface of carbonic anhydrase has no significant influence on its folding from sodium dodecyl sulfate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Protein hydrogen exchange mechanism: local fluctuations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

A two-process model describes the hydrogen exchange behavior of cytochrome c in the molten globule state with various extents of acetylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Neighboring side chain effects on asparaginyl and aspartyl degradation: an ab initio study of the relationship between peptide conformation and backbone NH acidity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

The pH dependence of hydrogen exchange in proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3135700

27 September 2018

Influence of charge on the rate of amide proton exchange

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of effective protein charge by capillary electrophoresis: effects of charge regulation in the analysis of charge ladders

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Denatured states of human carbonic anhydrase II: an NMR study of hydrogen/deuterium exchange at tryptophan-indole-H(N) sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Measurement of electrostatic interactions in protein folding with the use of protein charge ladders

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein internal flexibility and global stability: effect of urea on hydrogen exchange rates of bovine pancreatic trypsin inhibitor

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

THE USE OF SUBSTITUENT CONSTANTS IN THE ANALYSIS OF THE STRUCTURE--ACTIVITY RELATIONSHIP IN PENICILLIN DERIVATIVES

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Studies of base pair kinetics by NMR measurement of proton exchange

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isotope effects in peptide group hydrogen exchange

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein conformational stabilities can be determined from hydrogen exchange rates

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amide protein exchange and surface conformation of the basic pancreatic trypsin inhibitor in solution. Studies with two-dimensional nuclear magnetic resonance

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exchange of hydrogen atoms in insulin with deuterium atoms in aqueous solutions

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamic model of globular protein conformations based on NMR studies in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Acetylation of L12 increases interactions in the Escherichia coli ribosomal stalk complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hydrogen exchange

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Application of SIMSTEX to oligomerization of insulin analogs and mutants

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluating electrostatic contributions to binding with the use of protein charge ladders

1 reference

https://pubmed.ncbi.nlm.nih.gov/21090618

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/JA9067035

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Europe PubMed Central

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16 January 2020

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Europe PubMed Central

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16 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

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16 January 2020

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