(Q35130380)

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Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16963497%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16963497%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

1 reference

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inferred from title

Buchnera aphidicola

1 reference

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inferred from title

Acyrthosiphon pisum

object named as

Acyrthosiphon pisum

1 reference

based on heuristic

inferred from title

5

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Europe PubMed Central

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30 December 2019

Jean-Michel Fayard

4

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Jean-Michel Fayard

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Europe PubMed Central

30 December 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16963497%20AND%20SRC:MED&resulttype=core&format=json

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Hubert Charles

1

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30 December 2019

Federica Calevro

2

1 reference

Europe PubMed Central

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30 December 2019

José Vinuelas

3

1 reference

Europe PubMed Central

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30 December 2019

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publication date

8 September 2006

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Europe PubMed Central

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30 December 2019

Nucleic Acids Research

1 reference

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30 December 2019

34

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30 December 2019

16

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30 December 2019

4583-4592

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16963497%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

Codon usage domains over bacterial chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

SITRANS: a Web Information System for Microarray Experiments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Adaptive evolution in GroEL from distantly related endosymbiotic bacteria of insects.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Determination of the core of a minimal bacterial gene set

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Comparative genomics, minimal gene-sets and the last universal common ancestor

1 reference

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28 July 2018

Nutritional interactions in insect-microbial symbioses: aphids and their symbiotic bacteria Buchnera

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Mutational and selective pressures on codon and amino acid usage in Buchnera, endosymbiotic bacteria of aphids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Gene essentiality determines chromosome organisation in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Regulation of gene expression by histone-like proteins in bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Genomic DNA standards for gene expression profiling in Mycobacterium tuberculosis

1 reference

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28 July 2018

50 Million Years of Genomic Stasis in Endosymbiotic Bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

The process of genome shrinkage in the obligate symbiont Buchnera aphidicola

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Significance analysis of microarrays applied to the ionizing radiation response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Lateral gene transfer and the nature of bacterial innovation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Evidence for genetic drift in endosymbionts (Buchnera): analyses of protein-coding genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Deleterious mutations destabilize ribosomal RNA in endosymbiotic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Asymmetric substitution patterns in the two DNA strands of bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Codon usage and base composition in Rickettsia prowazekii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Accelerated evolution and Muller's rachet in endosymbiotic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Residues in chaperonin GroEL required for polypeptide binding and release

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Attenuation in the control of expression of bacterial operons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Codon usage and tRNA content in unicellular and multicellular organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Codon usage in the G+C-rich Streptomyces genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

On the physical basis for ambiguity in genetic coding interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

28 July 2018

Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Over expression of a tRNA(Leu) isoacceptor changes charging pattern of leucine tRNAs and reveals new codon reading

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

The genomic pattern of tDNA operon expression in E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Variation in the strength of selected codon usage bias among bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Consequences of reductive evolution for gene expression in an obligate endosymbiont

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Mistranslational errors associated with the rare arginine codon CGG in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Base composition bias might result from competition for metabolic resources.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Physical and genetic map of the genome of Buchnera, the primary endosymbiont of the pea aphid Acyrthosiphon pisum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Growth-rate-dependent accumulation of twelve tRNA species in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

Codon catalog usage is a genome strategy modulated for gene expressivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636365

27 September 2018

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1 reference

https://pubmed.ncbi.nlm.nih.gov/16963497

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploring the regulation of tRNA distribution on the genomic scale

1 reference

https://pubmed.ncbi.nlm.nih.gov/16963497

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ROSO: optimizing oligonucleotide probes for microarrays

1 reference

https://pubmed.ncbi.nlm.nih.gov/16963497

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA determinants of rRNA synthesis in E. coli: growth rate dependent regulation, feedback inhibition, upstream activation, antitermination

1 reference

https://pubmed.ncbi.nlm.nih.gov/16963497

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKL597

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16963497%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

PMC publication ID

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16963497%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

PubMed publication ID

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16963497%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

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