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Nonallelic transcriptional roles of CTCF and cohesins at imprinted loci.
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2 February 2020
title
Nonallelic transcriptional roles of CTCF and cohesins at imprinted loci
(English)
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2 February 2020
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Anne Ferguson-Smith
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2
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2 February 2020
Marisa S. Bartolomei
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Marisa S Bartolomei
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2 February 2020
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Shu Lin
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2 February 2020
Richard M Schultz
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English
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publication date
31 May 2011
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2 February 2020
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Molecular and Cellular Biology
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2 February 2020
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31
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2 February 2020
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15
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2 February 2020
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3094-3104
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2 February 2020
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CTCF regulates allelic expression of Igf2 by orchestrating a promoter-polycomb repressive complex 2 intrachromosomal loop
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Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
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Two distinct mechanisms of silencing by the KvDMR1 imprinting control region
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The transcriptional status but not the imprinting control region determines allele-specific histone modifications at the imprinted H19 locus
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Mutations in cohesin complex members SMC3 and SMC1A cause a mild variant of cornelia de Lange syndrome with predominant mental retardation
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Differential regulation of imprinting in the murine embryo and placenta by the Dlk1-Dio3 imprinting control region
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Allele-specific histone modifications regulate expression of the Dlk1-Gtl2 imprinted domain
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Zac1 regulates an imprinted gene network critically involved in the control of embryonic growth
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13 July 2018
CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2
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13 July 2018
Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes
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13 July 2018
Developmental profile of H19 differentially methylated domain (DMD) deletion alleles reveals multiple roles of the DMD in regulating allelic expression and DNA methylation at the imprinted H19/Igf2 locus
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13 July 2018
Rasgrf1 imprinting is regulated by a CTCF-dependent methylation-sensitive enhancer blocker
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13 July 2018
Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila
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13 July 2018
Precocious sister chromatid separation (PSCS) in Cornelia de Lange syndrome
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13 July 2018
An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region
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13 July 2018
Cornelia de Lange syndrome is caused by mutations in NIPBL, the human homolog of Drosophila melanogaster Nipped-B
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13 July 2018
NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome
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13 July 2018
Drosophila nipped-B protein supports sister chromatid cohesion and opposes the stromalin/Scc3 cohesion factor to facilitate long-range activation of the cut gene
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13 July 2018
Insulator and silencer sequences in the imprinted region of human chromosome 11p15.5.
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13 July 2018
Disruption of Imprinted Gene Methylation and Expression in Cloned Preimplantation Stage Mouse Embryos1
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13 July 2018
Imprinting regulation of the murine Meg1/Grb10 and human GRB10 genes; roles of brain-specific promoters and mouse-specific CTCF-binding sites.
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13 July 2018
Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1
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13 July 2018
Analysis of sequence upstream of the endogenous H19 gene reveals elements both essential and dispensable for imprinting
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13 July 2018
Comparative sequence analysis of the imprinted Dlk1-Gtl2 locus in three mammalian species reveals highly conserved genomic elements and refines comparison with the Igf2-H19 region.
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13 July 2018
Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins
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13 July 2018
CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147605
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13 July 2018
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
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13 July 2018
A maternally methylated CpG island in KvLQT1 is associated with an antisense paternal transcript and loss of imprinting in Beckwith-Wiedemann syndrome
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13 July 2018
Deletion of the H19 differentially methylated domain results in loss of imprinted expression of H19 and Igf2.
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13 July 2018
The mouse Gtl2 gene is differentially expressed during embryonic development, encodes multiple alternatively spliced transcripts, and may act as an RNA
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13 July 2018
Multiple imprinted sense and antisense transcripts, differential methylation and tandem repeats in a putative imprinting control region upstream of mouse Igf2.
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13 July 2018
A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene
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13 July 2018
The cohesin ring concatenates sister DNA molecules
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27 September 2018
The role of CTCF in regulating nuclear organization
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27 September 2018
Deletions and epimutations affecting the human 14q32.2 imprinted region in individuals with paternal and maternal upd(14)-like phenotypes.
1 reference
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PubMed Central
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27 September 2018
Imprinting on distal chromosome 7 in the placenta involves repressive histone methylation independent of DNA methylation.
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PubMed Central
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27 September 2018
Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147605
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27 September 2018
A differentially methylated region within the gene Kcnq1 functions as an imprinted promoter and silencer.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147605
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27 September 2018
Delta-like and gtl2 are reciprocally expressed, differentially methylated linked imprinted genes on mouse chromosome 12.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147605
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27 September 2018
Maternal-specific footprints at putative CTCF sites in the H19 imprinting control region give evidence for insulator function.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147605
retrieved
27 September 2018
Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylation-sensitive
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21628529
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Bidirectional silencing and DNA methylation-sensitive methylation-spreading properties of the Kcnq1 imprinting control region map to the same regions
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21628529
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Segmental and full paternal isodisomy for chromosome 14 in three patients: narrowing the critical region and implication for the clinical features
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21628529
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
CTCF binding sites promote transcription initiation and prevent DNA methylation on the maternal allele at the imprinted H19/Igf2 locus
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21628529
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/MCB.01449-10
1 reference
stated in
Europe PubMed Central
PMCID
3147605
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21628529%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 February 2020
PMCID
3147605
1 reference
stated in
Europe PubMed Central
PMCID
3147605
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21628529%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 February 2020
PubMed ID
21628529
1 reference
stated in
Europe PubMed Central
PMCID
3147605
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21628529%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 February 2020
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