(Q35139723)

6 August 2017

title

Identification of HIV superinfection in seroconcordant couples in Rakai, Uganda, by use of next-generation deep sequencing (English)

1 reference

6 August 2017

0 references

1 reference

1 reference

9

Oliver Laeyendecker

0 references

Nelson Sewankambo

Nelson Sewankambo

10

0 references

Maria J Wawer

13

Maria J Wawer

1 reference

6 August 2017

12

David Serwadda

1 reference

6 August 2017

11

Ronald H Gray

1 reference

Rakai Health Sciences Program

6 August 2017

16

Rakai Health Sciences Program

1 reference

Aleisha N Collinson-Streng

6 August 2017

2

Aleisha Collinson-Streng

1 reference

6 August 2017

15

Thomas C Quinn

1 reference

6 August 2017

6

Jordyn Manucci

1 reference

6 August 2017

7

Aaron A R Tobian

1 reference

6 August 2017

3

Craig Martens

1 reference

6 August 2017

4

Stacy Ricklefs

1 reference

6 August 2017

5

Caroline E Mullis

1 reference

6 August 2017

14

Stephen F Porcella

1 reference

6 August 2017

Andrew D Redd

1

1 reference

6 August 2017

Ethan J Selig

8

1 reference

6 August 2017

language of work or name

English

0 references

publication date

22 June 2011

1 reference

Journal of Clinical Microbiology

6 August 2017

published in

1 reference

6 August 2017

volume

49

1 reference

6 August 2017

issue

8

1 reference

6 August 2017

page(s)

2859-2867

1 reference

Development of a low bias method for characterizing viral populations using next generation sequencing technology

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Comparison of methods to detect HIV dual infection

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Changes in the distribution of HIV type 1 subtypes D and A in Rakai District, Uganda between 1994 and 2002.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Analysis of infectious virus clones from two HIV-1 superinfection cases suggests that the primary strains have lower fitness

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

HIV-1 subtypes and differences in heterosexual HIV transmission among HIV-discordant couples in Rakai, Uganda

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Geographic HIV type 1 subtype distribution in Rakai district, Uganda

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Examination of a second region of the HIV type 1 genome reveals additional cases of superinfection

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Immune-driven recombination and loss of control after HIV superinfection.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Chronic HIV-1 infection frequently fails to protect against superinfection

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Frequency of HIV type 1 dual infection and HIV diversity: analysis of low- and high-risk populations in Mbeya Region, Tanzania

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

In-depth analysis of a heterosexually acquired human immunodeficiency virus type 1 superinfection: evolution, temporal fluctuation, and intercompartment dynamics from the seronegative window period through 30 months postinfection

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

HIV drug resistance acquired through superinfection

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Evidence for frequent reinfection with human immunodeficiency virus type 1 of a different subtype

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Human immunodeficiency virus type 1 clade B superinfection: evidence for differential immune containment of distinct clade B strains

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

HIV-1 intra-subtype superinfection rates: estimates using a structured coalescent with recombination

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Lack of detectable human immunodeficiency virus type 1 superinfection during 1072 person-years of observation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Intersubtype human immunodeficiency virus type 1 superinfection following seroconversion to primary infection in two injection drug users

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

A randomized, community trial of intensive sexually transmitted disease control for AIDS prevention, Rakai, Uganda

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

The neighbor-joining method: a new method for reconstructing phylogenetic trees

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Disease progression due to dual infection in an HLA-B57-positive asymptomatic long-term nonprogressor infected with a nef-defective HIV-1 strain

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Absence of HIV-1 superinfection 1 year after infection between 1985 and 1997 coincides with a reduction in sexual risk behavior in the seroincident Amsterdam cohort of homosexual men.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Evaluation of pre-screening methods for the identification of HIV-1 superinfection.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

HIV-1 superinfection in an HIV-2-infected woman with subsequent control of HIV-1 plasma viremia

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Lack of neutralizing antibody response to HIV-1 predisposes to superinfection.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

Incidence of HIV superinfection following primary infection.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3147722

A patient with HIV-1 superinfection

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21697329

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JCM.00804-11

1 reference

6 August 2017

1 reference

6 August 2017

1 reference